PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr006883.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

ERF

Protein Properties

Length: 266aa MW: 29424 Da PI: 8.7115

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006883.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.5e-20	135	184	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ +++g Pbr006883.1 135 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFTTAEEAARAYDKAAIEFRG 184 59*****.******82....48**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.47E-34	134	192	No hit	No description
SuperFamily	SSF54171	1.24E-22	135	193	IPR016177	DNA-binding domain
Pfam	PF00847	5.1E-14	135	184	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-37	135	198	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.37	135	192	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.8E-33	135	192	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-12	136	147	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-12	158	174	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MQPSYERFKP SDSQPAHSAP PPFQPSPPPP RLTQDQEYTV IVSALRNVVA GTATAASVDL 60 NSLLPPPQRA ATFSPRYTTS TSCSSNTLLV PSYLDTCDVC KIKGCLGCTL FPPAAQEEKG 120 SSSNKRGPKK RVKKNYRGVR QRPWGKWAAE IRDPRRAARV WLGTFTTAEE AARAYDKAAI 180 EFRGPRAKLN FPFPDTTLVT QESNSSQPQQ QQVVTEQRNK NVEFSGEVET TGIMKENELL 240 EEDFQQWMMM LDATNNSSDS GNVHI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-23	134	193	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-23	134	193	4	64	ATERF1
3gcc_A	2e-23	134	193	4	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006883.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365682.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109-like
Refseq	XP_009365683.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109-like
Refseq	XP_009365684.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	2e-33	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A498IXL0	1e-143	A0A498IXL0_MALDO; Uncharacterized protein
STRING	XP_009365682.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009365683.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009365684.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	7e-31	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]