PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007018.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 277aa    MW: 29793.2 Da    PI: 5.7932
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007018.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-15207241133
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                  C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ k
  Pbr007018.1 207 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANK 241
                  *****99999**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.9E-1265100IPR010399Tify domain
PROSITE profilePS5132014.62465100IPR010399Tify domain
PfamPF062001.9E-126899IPR010399Tify domain
PROSITE profilePS5101713.245138180IPR010402CCT domain
PfamPF062032.7E-16138180IPR010402CCT domain
SMARTSM004012.6E-8201266IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-9203240No hitNo description
Gene3DG3DSA:3.30.50.104.4E-13205241IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.28E-12206241No hitNo description
PfamPF003202.7E-13207241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAESEHQNSI YSSTGGVTQS NQVDDQDDDV EEPIDTPNIR FEDSTAIPPN QLYLPSSEYP  60
PPAAPNGASD QLTLSFHGEV YVFDAVSPDK VQAVLLLLGG YEIPSGIPSM GPVPLNQQVG  120
TFRYGMNDLP ARPTQPQRAA SLSRFREKRK ERCFDKKIRY TVRKEVALRM QRKKGQFTSS  180
KGSSDDGGLA SSTQVSGQDE SMQETSCTHC GISSKSTPMM RRGPAGPRTL CNACGLKWAN  240
KIDGGVQDSD VVAMGANIAP SSANGNNSAM TVDRKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007018.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366327.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL76e-69GAT24_ARATH; GATA transcription factor 24
TrEMBLD9ZIY81e-175D9ZIY8_MALDO; GATA domain class transcription factor
STRINGXP_009366327.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.14e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]