PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007075.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 498aa    MW: 56485.6 Da    PI: 7.9402
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007075.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.59.6e-381803412129
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa..sec...eaess 78 
                  + k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl q++p+ik+l ++                + s+a  ++c   +    
  Pbr007075.1 180 TNKRDRHSKINTARGPRDRRMRLSLEVARKFFGLQDVLEFDKASKTVEWLLIQSEPEIKKLSRDhhrkfnyknmvrcaktT-SPAtsESCeilS---G 273
                  679****************************************************************99999999999852.333333443332...2 PP

          TCP  79 sssasnsssg.................kaaksaakskksqksaasalnlakesrakararare.rtrek 129
                  + +a   +++                 k ++++ k  ++q+++ +++ lak sr+kararare r++ k
  Pbr007075.1 274 VDEAP-TNINisnggnddndkvrscgiKPSAKERKIVHRQSRKRAFHPLAKASREKARARAREsRQSRK 341
                  22222.1111334455666788999975555555666677777778*****************877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-38181369IPR005333Transcription factor, TCP
PROSITE profilePS5136931.941182240IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.703323342IPR017888CYC/TB1, R domain
PROSITE profilePS5137011.314349366IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MFPSDNTDNV NELVPVSYPH VDQPFFHSRP FDHDITTVTP NFFTNSNPNP NSGQQRGGEE  60
NLHQQHHHPP LSLLYFPSPF EDDDVLLFQQ HHHQEPDHIE ISLHESQVPP YFMKEAAAAA  120
TAHAAAAATA ADDNTGTVVG DDHQKTTTTS VNIKMVDWDS NKNGHHMDMD DQPQIPRRRT  180
NKRDRHSKIN TARGPRDRRM RLSLEVARKF FGLQDVLEFD KASKTVEWLL IQSEPEIKKL  240
SRDHHRKFNY KNMVRCAKTT SPATSESCEI LSGVDEAPTN INISNGGNDD NDKVRSCGIK  300
PSAKERKIVH RQSRKRAFHP LAKASREKAR ARARESRQSR KSAFHPLAKA SRENARARAR  360
ERTREKMQRS KKPSNDQAKL SRLNSWNPFE SGEESSAYNN NMNNTANDQP DSLVALRPYP  420
DGVEEPLISS LAGDIQDMVV DHGATHDAMV VMGKWSPSSV FTPLQQNTGI SQEHQQFADF  480
QFFDKPWDVY NNTHKLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007075.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010650.0KM501065.1 Malus domestica TCP domain-containing protein 18 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337020.10.0PREDICTED: transcription factor TCP12-like
RefseqXP_009337431.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A498I1830.0A0A498I183_MALDO; Uncharacterized protein
STRINGXP_009337020.10.0(Pyrus x bretschneideri)
STRINGXP_009337431.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-24TCP domain protein 12