PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007235.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 512aa    MW: 58059.5 Da    PI: 4.1994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007235.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.7e-08248296247
                      SSS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + W++eE++l+ ++v    + lG++ W++ +  ++  Rt k+++s+++++
      Pbr007235.1 248 QTWSEEEEQLFHRVVfstpTSLGKNFWDKLSTVFP-SRTKKEIVSYYFNV 296
                      68*************5555667777**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.0E-4246299IPR001005SANT/Myb domain
PfamPF002491.5E-6248296IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-5248297IPR009057Homeodomain-like
CDDcd001671.63E-7249297No hitNo description
Gene3DG3DSA:1.10.10.607.0E-5249295IPR009057Homeodomain-like
PROSITE profilePS500906.226250297IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVQKRSLDDE EIFVSFKHPR QVGHNKELVS FSESVFPGDV SEEPETLENG CAKDKNRSEE  60
EISDDKFSGL PKGGEDVETS ASRSFTISSW ATSSTSGEDS LFEALFHGSF FPEYFNHERS  120
IRTLTQFEDI YSVLLDHPPR KSASIGPEHQ ADVPLWGAQG AHNNFDLEDE KRLMGTCVIP  180
MPDSDTELFT DTGCIVGKGR IDCSCEDGES VRCVRQHILE AREKLVKTIG PKRFEELGFN  240
DMGEQVAQTW SEEEEQLFHR VVFSTPTSLG KNFWDKLSTV FPSRTKKEIV SYYFNVFMLR  300
KRAEQNRYDP MNIDSDNDEW QGSNDYGDNQ PSVTEDEDSV VESPEGRRVP GYNQNWKDDL  360
EVFDEDDTDE TCDDNVDVDM FGRGPEQILD RCYGLVDNCS SCPIPQLQDK ISWDEKVDQE  420
VQDDSCTSVD AAVAASQESQ RKPEDGNHWS GSFNRGDHEY VLEPCDAKIW DAGYMTFPKN  480
KVDFLPTSNM IEEVFGKESW NYKARDGKNL G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338591.10.0PREDICTED: uncharacterized protein LOC103930912
TrEMBLA0A498I5I80.0A0A498I5I8_MALDO; Uncharacterized protein
STRINGXP_009338591.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810