PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007236.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 527aa    MW: 58123 Da    PI: 8.5763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007236.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012344366123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F++   L  H  +H
  Pbr007236.1 344 FECTTCNKVFRSYQALGGHRASH 366
                  89**********99999998887 PP
2zf-C2H212.70.00039433455123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C+++F++   L  H r+H
  Pbr007236.1 433 HSCPICHRVFPSGQALGGHKRSH 455
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-5634No hitNo description
PROSITE profilePS501579.806940IPR007087Zinc finger, C2H2
PfamPF139125.6E-5932IPR007087Zinc finger, C2H2
SMARTSM003550.059931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.28495122IPR007087Zinc finger, C2H2
SMARTSM003550.08995117IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-697119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
PfamPF139128.9E-13344368IPR007087Zinc finger, C2H2
SMARTSM003550.039344366IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263344371IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-6344366No hitNo description
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-6428455No hitNo description
PROSITE profilePS501578.974433455IPR007087Zinc finger, C2H2
PfamPF139128.5E-12433456IPR007087Zinc finger, C2H2
SMARTSM003550.023433455IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280435455IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEEDQELKYV CKFCTKSFPC GRSLGGHMKS HLTNHSPETE EKLNTGRVKP SSGNNGGSDF  60
GGGPHQQPGY GLRENPKKTL RLADLSEETS FLLDKFCREC GKGFQSWKAL FGHMKCHSEK  120
ERVSIESFEE HEGSWTSQSD NETPTAAAPN RRRRSGRRRT RYMGATTSSS NFSIANASVP  180
ATTTSSVSET EQEQEEVAMC LMMLSRDSSH WGGLKLVPHN SPDDNSGFSD SPSSVRTIAD  240
IKGKIDETLK LKNKLTKKVL EPRDFESLAV LEGRKSKFCS SDGGFSKNDK LGSNKYNSSK  300
RKIREACDFE LRSDKSPKKS STSRADALDS DVVVCKSSQK RSKFECTTCN KVFRSYQALG  360
GHRASHKKIK GCFASKIESS ENTMETDISP ESCCNNENPI EKEIAESSAK STKGHSXXXX  420
XXXXXXXXXX XXHSCPICHR VFPSGQALGG HKRSHLIGEA KITTQTLVIQ KPAVPEVRDF  480
LDLNLPAPVE EESSSNHDAA AVAFKPWWVG RSSHKHEAAL VSLISN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018498903.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A498I8P10.0A0A498I8P1_MALDO; Uncharacterized protein
STRINGXP_009338601.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-28C2H2-like zinc finger protein