PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr007292.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 809aa MW: 91387.3 Da PI: 6.9335

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr007292.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.2	9.3e-23	427	470	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Pbr007292.1 427 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 470 67999*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.1550.10	1.2E-52	125	172	No hit	No description
Gene3D	G3DSA:3.90.1550.10	1.2E-52	207	372	No hit	No description
SuperFamily	SSF55681	1.99E-31	207	368	No hit	No description
PROSITE profile	PS50066	25.721	418	478	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-31	418	477	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-26	419	512	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	420	440	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-21	429	472	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	440	455	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	455	476	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MDKAMSDGFG CSPASLLALL LVLIILNWLL VLHFNSNLRY LFLCFLCDVM QIKPVIQRSC 60 TDENVCYHKP SEGVETNSIT TNCMAKEENT SSYFDFRFYD NYFGNILQMM VSMTTPQARS 120 IGLPLMNLIK LKGIPILQQL HLEEQLLRTS SHNWCIVNDG TNDPAIVMGV SGMILSWTVQ 180 CKSVIAWSIA DLFSELHDSG FVHSLRKPAE LLEIDLVLRD QIPVIRRFTG GGTVTVDQNT 240 LFVTFICNKD AVPGLQPYPR PIMSWSSLVY SKVFEGLADF QLRENDYVFG NRKFGGNAQS 300 ISKNRWIHHT SFLWDYDVRN MAYLKHPKRV PEYRLARDHL EFICRMKDYI PRSVFLEKTV 360 EALGSQFSVR PERSDAIEAT SSTKFVPSTR LLTRQELEEA AAFDSQAERN LSRSLSLMGR 420 VKLKIKKLES SGNRQVTFSK RRNGILKKAK ELSILCDVDI VLLMFSPTGR PTIFQGDRSN 480 FEEIVSKFAQ LTPQERAKRK LESLEVLKKT FKKLDHDVNV QDFMSSSSQT VQDLTHQVTV 540 LQTQLTELHK KLSFWSDPDK VDNLEQLRQM EDMLKESINR TCLRKENLGK HQLTSLDCTN 600 QLDFCASKFQ NGMPSSLLVG GGMQEAQPIT WLFNSNNQHM IFPNEPNYLP HRGVECSTNA 660 TVPHYTSYFG TGTSTSPSTS KQSEAGDPVQ LDTMGQISNM AGGGGLNEFD INACLSTEPG 720 KHYAYPSYCS SYVPDDQKLK HEMEKNVPAN PVDYQLSSNF ELPTSLYETD QHAWLSSSGP 780 SGIAVYKENT YQPVSPSIDI FRSVLASL*

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MDKAMSDGFG CSPASLLALL LVLIILNWLL VLHFNSNLRY LFLCFLCDVM QIKPVIQRSC  60
TDENVCYHKP SEGVETNSIT TNCMAKEENT SSYFDFRFYD NYFGNILQMM VSMTTPQARS  120
IGLPLMNLIK LKGIPILQQL HLEEQLLRTS SHNWCIVNDG TNDPAIVMGV SGMILSWTVQ  180
CKSVIAWSIA DLFSELHDSG FVHSLRKPAE LLEIDLVLRD QIPVIRRFTG GGTVTVDQNT  240
LFVTFICNKD AVPGLQPYPR PIMSWSSLVY SKVFEGLADF QLRENDYVFG NRKFGGNAQS  300
ISKNRWIHHT SFLWDYDVRN MAYLKHPKRV PEYRLARDHL EFICRMKDYI PRSVFLEKTV  360
EALGSQFSVR PERSDAIEAT SSTKFVPSTR LLTRQELEEA AAFDSQAERN LSRSLSLMGR  420
VKLKIKKLES SGNRQVTFSK RRNGILKKAK ELSILCDVDI VLLMFSPTGR PTIFQGDRSN  480
FEEIVSKFAQ LTPQERAKRK LESLEVLKKT FKKLDHDVNV QDFMSSSSQT VQDLTHQVTV  540
LQTQLTELHK KLSFWSDPDK VDNLEQLRQM EDMLKESINR TCLRKENLGK HQLTSLDCTN  600
QLDFCASKFQ NGMPSSLLVG GGMQEAQPIT WLFNSNNQHM IFPNEPNYLP HRGVECSTNA  660
TVPHYTSYFG TGTSTSPSTS KQSEAGDPVQ LDTMGQISNM AGGGGLNEFD INACLSTEPG  720
KHYAYPSYCS SYVPDDQKLK HEMEKNVPAN PVDYQLSSNF ELPTSLYETD QHAWLSSSGP  780
SGIAVYKENT YQPVSPSIDI FRSVLASL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-14	418	509	1	90	Myocyte-specific enhancer factor 2B

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr007292.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498I7N4	0.0	A0A498I7N4_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7499	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-76	AGAMOUS-like 65