PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr007300.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 331aa MW: 37483.4 Da PI: 6.5109

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr007300.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.5	1e-26	163	213	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s +++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl Pbr007300.1 163 SKMLSRQTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 213 57899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.076	145	234	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-22	166	213	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGRGGGDGGE AHRRRVAMVE FAVAPSRGYA CDWQFDLPIV QDHRFPDPLP SLESCVNIDP 60 IYSSLDIPPI RTVLQDDEIF FGNGNALFGV NSNDLCGGLT EINHNHHQQF QQQQQPPLLL 120 TCKNDENGII DMNDSLEERD KAISERPHSS KRHRSSSSSL SSSKMLSRQT ISQYFYMPIT 180 QAAKELNVGL TLLKKRCREL GIRRWPHRKL TSLQTLIRNI QELGKEGEEG EEKLRNAIAL 240 LEMERKLLEE APDMQLEDNT KRLRQACFKA NYKKRKIMGT KVMEKSQSSF CCSNIQYPTS 300 SMDANEEDEE IKSLLSDSFS LNNNACITLF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr007300.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018499094.1	0.0	PREDICTED: protein RKD2-like
TrEMBL	A0A498I6E3	1e-143	A0A498I6E3_MALDO; Uncharacterized protein
STRING	XP_008360907.1	1e-180	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-43	RWP-RK domain-containing protein