PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007753.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 444aa    MW: 49166 Da    PI: 5.1557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007753.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.51.1e-89474322373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                  ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++ +++ ++   +s+t ++  s+ +++++l  ++++ P+++f++ +
  Pbr007753.1  47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVCPTPMNFNGSSST-STIPSRLMSVTELagYVDLIPWHRFGYCA 143
                  689***************************************************88887765544444.345566666666689************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.vak.rledl. 189
                   N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+Rpegpp lR+T+ +   ++    + + ee+g rLa+f +  +vpfefnv+   + +le l 
  Pbr007753.1 144 SNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRPEGPPLLRVTVPNWRPQVpplLNVSSEEVGLRLANFSRFRDVPFEFNVIeN-SsSLELLv 240
                  ************************************************998755558899999***********************952.32555444 PP

         GRAS 190 ....eleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      ++++L+++++E+l+Vn++  l +l          ++++s    r+++L++++sl+P+++vvv++++d++ +s+  r++ +++y +  fdsle+ 
  Pbr007753.1 241 ttelNPSSLDLREDEVLVVNCQNWLRYLSdeprggipgHQDGS---MRNTFLNTIRSLNPRIIVVVDEDSDLSVPSLSSRITTCFNYLWIPFDSLETF 335
                  4444999**********************44444444444444...566************************************************* PP

         GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                  lp++s +r+ +E   +g +i+n++  eg +r+er e+  + ++rl++ GF++  + e++a ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++a
  Pbr007753.1 336 LPKDSTQRMDYESD-VGHKIENIIGFEGHQRIERLESGVTMSQRLRNIGFSSTIFCEETAREVKALLDEHA-SGWGMKREEDMLVLTWKGHNSVFATA 431
                  **************.********************************************************.889999999***************** PP

         GRAS 373 W 373
                  W
  Pbr007753.1 432 W 432
                  * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.12320414IPR005202Transcription factor GRAS
PfamPF035143.9E-8747432IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKTEVRGSIT SISLQNPSTA LLTTSQGTSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VCPTPMNFNG SSSTSTIPSR  120
LMSVTELAGY VDLIPWHRFG YCASNSAIFK AIQGCPKVHI LDFSITHCMQ WPTLIDALAK  180
RPEGPPLLRV TVPNWRPQVP PLLNVSSEEV GLRLANFSRF RDVPFEFNVI ENSSSLELLV  240
TTELNPSSLD LREDEVLVVN CQNWLRYLSD EPRGGIPGHQ DGSMRNTFLN TIRSLNPRII  300
VVVDEDSDLS VPSLSSRITT CFNYLWIPFD SLETFLPKDS TQRMDYESDV GHKIENIIGF  360
EGHQRIERLE SGVTMSQRLR NIGFSSTIFC EETAREVKAL LDEHASGWGM KREEDMLVLT  420
WKGHNSVFAT AWVPNPNGLL IED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-604043427420Protein SHORT-ROOT
5b3h_E3e-604043427420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007753.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350678.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A498HB600.0A0A498HB60_MALDO; Uncharacterized protein
STRINGXP_009350678.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein