PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008042.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Whirly
Protein Properties Length: 237aa    MW: 25794.7 Da    PI: 10.2422
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008042.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly207.51.5e-64591942137
       Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                  ++k+kaal++ +v+ptf++l+sg+l+++r+G+++l++++a++erkydWek+q falsatev+ l++l++++sce+fhdp++k+sn+G+vrk+l+++P+
  Pbr008042.1  59 IFKGKAALSLTPVLPTFTKLESGSLVVDRRGSVMLKFTPAIGERKYDWEKRQMFALSATEVGALISLGPNDSCELFHDPSMKSSNAGQVRKSLSIKPH 156
                  9************************************************************************************************* PP

       Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  +dGsG+fv+l+v n+l+k+ esfsvPv+ aefav++++
  Pbr008042.1 157 ADGSGYFVSLTVVNNLLKTRESFSVPVTTAEFAVMKTA 194
                  ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.0E-7546212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-6551215IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-6059193IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLKVLRVLSS STAKFRSHFC TRDALSMYAF THITRFSTAT QKFSVKGPSS HQVYASFDIF  60
KGKAALSLTP VLPTFTKLES GSLVVDRRGS VMLKFTPAIG ERKYDWEKRQ MFALSATEVG  120
ALISLGPNDS CELFHDPSMK SSNAGQVRKS LSIKPHADGS GYFVSLTVVN NLLKTRESFS  180
VPVTTAEFAV MKTACSFALP HIMGWDRLTN KMPAGGGGGG GQESKAVPQL LEEWDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-85502128170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-85502128170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-85502128170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-85502128170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008042.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366880.11e-176PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
SwissprotD9J0342e-91WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A498K2I01e-162A0A498K2I0_MALDO; Uncharacterized protein
STRINGXP_009366880.11e-175(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-89WHIRLY 2