PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008209.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 241aa    MW: 27158.7 Da    PI: 8.6219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008209.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-1270116354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +k+L
  Pbr008209.1  70 KNHKEAEKRRRERINSHLHKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 116
                  58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26967116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.07E-1070119No hitNo description
PfamPF000103.6E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1371127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1371125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.7E-5155220No hitNo description
SuperFamilySSF550217.32E-5155225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQPGNHQSQE LYRFLVQNGL ISVNNDHQLS AMQSFCSSSS NNYSYYPLEL SGVSTEHDAS  60
PQDRALAALK NHKEAEKRRR ERINSHLHKL RGLLPCNSKT DKASLLAKVV QRVKELKQQT  120
SEIAELETFP SETDEITVLS SNDYTNDGRI VFKASLCCED RSDLLPDLIE ILKSLHLKTI  180
KAEIATLGGR IRNVFIVAAD KDHTIESVNF LQNALKSLLE RSNSSERSKR RRVLDRTLVL  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008209.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894240.0KP689424.1 Prunus pseudocerasus isolate Unigene8039 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350864.11e-176PREDICTED: transcription factor bHLH106-like
RefseqXP_009350865.11e-176PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-87BH106_ARATH; Transcription factor bHLH106
TrEMBLD9ZIP11e-161D9ZIP1_MALDO; BHLH domain class transcription factor
STRINGXP_009350864.11e-176(Pyrus x bretschneideri)
STRINGXP_009350865.11e-176(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]