PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008294.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 190aa    MW: 20360.8 Da    PI: 7.2883
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008294.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.14.4e-5227126195
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                  vreqdr+lPian+srimkk+lP n+ki+kdaketvqecvsefisfvtse     asdkc rekrktingddllwa+atlGfedy++plkvyl+kyre 
  Pbr008294.2  27 VREQDRYLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFVTSEydaalASDKCLREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTKYREG 124
                  69**********************************************9888889*****************************************96 PP

        NF-YB  94 eg 95 
                  ++
  Pbr008294.2 125 DT 126
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-5024142IPR009072Histone-fold
SuperFamilySSF471137.51E-3630146IPR009072Histone-fold
PfamPF008082.2E-2333102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.1E-176179No hitNo description
PRINTSPR006152.1E-1785103No hitNo description
PRINTSPR006152.1E-17104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAEAPVSPGG VSHESGGDGS GSPRSNVREQ DRYLPIANIS RIMKKALPPN GKIAKDAKET  60
VQECVSEFIS FVTSEYDAAL ASDKCLREKR KTINGDDLLW AMATLGFEDY IDPLKVYLTK  120
YREGDTKGSG KGGDSSSKKD AQPSLNPQIS HQGSFSQGGN YSNSQVISCS SSPLTQLFSE  180
IIPSFKKVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4428123393NF-YB
4awl_B1e-4428123494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4428123494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008294.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499762.12e-99PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2
SwissprotQ67XJ24e-74NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A498IA821e-110A0A498IA82_MALDO; Uncharacterized protein
STRINGXP_009342377.15e-97(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-66nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]