PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr008318.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8389.11 Da PI: 10.608

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008318.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	127.5	4.1e-40	13	76	7	70
S1FA 7 eakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +akG+nPGlivl+vv glll+flvgny+lyvyaq++lPP+kkkPvskkklk+e+lkqGv++PGe Pbr008318.1 13 DAKGFNPGLIVLIVVVGLLLLFLVGNYALYVYAQRTLPPKKKKPVSKKKLKKERLKQGVSAPGE 76 79*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	4.3E-39	13	76	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MADQFEDKVP PPDAKGFNPG LIVLIVVVGL LLLFLVGNYA LYVYAQRTLP PKKKKPVSKK 60 KLKKERLKQG VSAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008318.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009342653.1	2e-46	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	3e-19	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A498IEU6	3e-44	A0A498IEU6_MALDO; Uncharacterized protein
STRING	XP_009342653.1	6e-46	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF38341	2	2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]