PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008410.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 810aa    MW: 88625.8 Da    PI: 6.4616
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008410.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182683457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Pbr008410.2 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 83
                 5789****************************************************97 PP
2START160.21.6e-501643712204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aeea++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l++++
  Pbr008410.2 164 IAEEALAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELIYTQ 260
                  799*******************************************************.7777777777***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    s++vR+ +lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Pbr008410.2 261 TYAPTTLAPaRDFWTLRYTTTLDNGSFVVCERSLSGSGAGPNpasASQFVRGVMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 358
                  ***********************************988888878999*************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  +++++ a+l++ +
  Pbr008410.2 359 AQRMTIAALRYIR 371
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3862084IPR001356Homeobox domain
SMARTSM003899.1E-162288IPR001356Homeobox domain
SuperFamilySSF466893.12E-162486IPR009057Homeodomain-like
CDDcd000861.52E-162585No hitNo description
PfamPF000464.0E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-182783IPR009057Homeodomain-like
CDDcd146861.37E-577116No hitNo description
PROSITE profilePS5084828.107154382IPR002913START domain
CDDcd088754.61E-70158374No hitNo description
SMARTSM002341.1E-42163373IPR002913START domain
SuperFamilySSF559617.42E-35163375No hitNo description
Gene3DG3DSA:3.30.530.202.4E-20163349IPR023393START-like domain
PfamPF018524.2E-48164371IPR002913START domain
PfamPF086702.5E-30710808IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MAMVVAHHRE SSSGSSINKH LDAGKYVRYT SEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPRQI KVWFQNRRCR EKQRKESSRL QIVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TAPAATTDAS CDSLVTTPQH SLRDANNPAG LLSIAEEALA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRSL  240
EVFTMFPAGN GGTIELIYTQ TYAPTTLAPA RDFWTLRYTT TLDNGSFVVC ERSLSGSGAG  300
PNPASASQFV RGVMLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
RMTIAALRYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLI RGFNDAVNGF NDDGWSLVNC  420
DGAEDVIITV NSTKNLTSTS NHANSLALLG GVLCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKAGSYAY PGMRPTRFTG GQIIMPLGHT IEQEELLEVV RLEGHSLTQE  540
DAFASRDIHL LQICSGVDEN AAGACSELVF APIDEMFPDD APLLPSGFRI IPLDSKTSDS  600
KATLNTHRTL DLASSLEVGS TTSNAAGDLT TFHNTRSVLT IAFQFPLDNS LQENVANMAR  660
QYVRSVISSV QRVAMAISPS GLSPSVGPKL SPSSPEAETL AHWICQSYRQ SMPVFTFANQ  720
AGLDMLETTL VALQDISLDK IFDEAGRKTL CADFSKLMNQ GFAYLPAGIC MSTMARHVSY  780
EQAIAWKVLA AEENSVHCLA FSFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008410.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774250.0FJ177425.1 Malus x domestica putative REV HD-ZipIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367069.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A498K8I50.0A0A498K8I5_MALDO; Uncharacterized protein
STRINGXP_009367069.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]