PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008470.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 539aa    MW: 59321.6 Da    PI: 6.0875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008470.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-1691135147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
      Pbr008470.1  91 RERWTEEEHKKFLEALKLYGRA-WRKIEEHIG-TKTAVQIRSHAQKF 135
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1685140IPR009057Homeodomain-like
PROSITE profilePS5129420.47486140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-987136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1689138IPR006447Myb domain, plants
SMARTSM007172.1E-1390138IPR001005SANT/Myb domain
PfamPF002494.5E-1491134IPR001005SANT/Myb domain
CDDcd001679.57E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MIIFLLYERG EDRDKDLLRF LQVEGVKRNG VVTGRAEEEE QFGSSGSNGV DSAGTGISPS  60
AGGVQFKDDQ ISSGNDFTPK VRKPYTIKKE RERWTEEEHK KFLEALKLYG RAWRKIEEHI  120
GTKTAVQIRS HAQKFFSKVA RYPNGGKAPA EEPIDIPPPR PKKKPMRPYP RKLVHPLDKE  180
TSIGEQPTRS RSPNLSVSEQ ENQSPTSVLS VIGSDALGST DSNTPSDGLS PDSSAAGVNS  240
ENLIHSEPNP LLEESGSPIN NCSLPNEQLT MKLELFPTDD VDASGGSAKE AFARSLKLFG  300
RTVLVTDSHR PSSRAAGTSQ SLPSDVQEEK PVQTSLPFNF TDMESASGNA EHVWDNFPYG  360
GHQGIYFMQF QNQNSDAVES GTNAYPVAWW TICPPFIPFH KQQQQQQPVN EHVDSKKVDG  420
EGSCTGSDAG SASDEENRDK DDETQGDHYQ QVSDKDGEPN SVLQFKASAN SAFSKIRAST  480
GKYRKGFVPY KRCMAERDAK SSTVASEDGD GKRICLSLWR PPVLVKTHEA LPFFHRTS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367121.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A498J5A40.0A0A498J5A4_MALDO; Uncharacterized protein
STRINGXP_009367121.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-65MYB_related family protein