PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008516.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 444aa    MW: 48547.6 Da    PI: 9.686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008516.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27.1e-06207229223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg+ F+  +nL+ H+ + H
  Pbr008516.1 207 SCPECGEIFTKAENLELHQAVrH 229
                  8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536206234IPR007087Zinc finger, C2H2
SuperFamilySSF563997.87E-22231441No hitNo description
Gene3DG3DSA:3.90.228.102.9E-14232440IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MASSHKPKTQ RKPTKQTHQK LQKHHQNKNP KPQKAEEKPA EKLPYWSVVR GLLTCKHLQP  60
VQLPQKQPNE QQAMEEANNA AKKCKKMRCS GSLCNNTKIM QRPELLASPE VHKKRAFSSM  120
GSSSNSNEAS SRSMKAPLHE INGVVSTSSS SFSAVSSSSN NNSSAGGGGS FRAMPFRRFS  180
GCYECRMVVD PVLGFARDPS LRGSICSCPE CGEIFTKAEN LELHQAVRHA VSELGPEDTS  240
KNIVEIIFQS SWLKKQTPIC KIDRILKVHN TQKTITKFEE YRDAIKAKAT KLPKKHPRCI  300
ADGNELLRFH CTTFACSLGL NGSSNLCNSI PHCNVCSIIK NGFNKFSGEL TEQGILTTAT  360
SGRAHDKAVV AAEEGDKRAM LVCRVIAGRV KKSLEGSVGN GNVGMEEYDS VAGAVGVYSN  420
LDELYVFNPK AILPCFVVIY GGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008516.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367352.10.0PREDICTED: uncharacterized protein LOC103957012
TrEMBLA0A498JC140.0A0A498JC14_MALDO; Uncharacterized protein
STRINGXP_009367352.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-103C2H2-like zinc finger protein