PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008550.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 598aa    MW: 65717.9 Da    PI: 6.0059
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008550.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24131232199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++p+ +a+++         ++ +  +l+++d++g +We+++iyr++++r++lt+GW++Fv+ + L +gD+vvF+  ++ ++e
  Pbr008550.1 131 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqADPPVQ--MLSVTDLHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFM--RNGRGE 224
                  89*********************999****995444444..8************************************************..457899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  ++++v+r+
  Pbr008550.1 225 MFIGVRRA 232
                  99***996 PP
2Auxin_resp90.23.6e-30279362183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  +a+ a+++  FevvY+P+a++s+Fvvk+e vekalkv +++GmR+kma+etedss+ ++ +Gt + +s  ++  W++S+Wr+L+
  Pbr008550.1 279 VAEMAAEGRQFEVVYYPKAGWSDFVVKAEVVEKALKVFWTAGMRVKMAMETEDSSRMTWfQGTLSTTSVPENGPWQGSPWRMLQ 362
                  5788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.89E-31122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-36125242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-20130227No hitNo description
PfamPF023624.7E-22131232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605131233IPR003340B3 DNA binding domain
SMARTSM010197.1E-21131233IPR003340B3 DNA binding domain
PfamPF065073.2E-27280362IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MPPPHQPHSH SHRRSIDPKI WRACAGNSVQ IPSLHSRVYY FPQGHLEQSS SSNSSSSAAL  60
LSPLLLSKPL ILCRISALHF LAVPTTDEVF AKLLLVPIPQ EFPNLEQPNG EEFDADDGGD  120
SERQDDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPPL NYQADPPVQM LSVTDLHGVV  180
WEFRHIYRGT PRRHLLTTGW SKFVNHKMLV AGDSVVFMRN GRGEMFIGVR RAVRSTASSD  240
CARLSSQIGG GVTYSTRLNT EDQDCSGRKV MSAEAVAEVA EMAAEGRQFE VVYYPKAGWS  300
DFVVKAEVVE KALKVFWTAG MRVKMAMETE DSSRMTWFQG TLSTTSVPEN GPWQGSPWRM  360
LQVTWDEPEV LQNAKRVSPW EVEFVGSAPS IHTTFSPTKR FRAPLSHGPL TNAEGEFFFP  420
MTGAANSAGV PFSASLLNYN NFPAGMQGAR QDTFCVSNLS HLLSENTTQM CTFNSIGKNE  480
GPKLKRVCTE LNIGGSQSDE LSPDSQSSVQ SFGMELDGNR SQTKVGRSSF QLFGKIIYLN  540
QPVEGCFDDV GCTEDSGNKG FNETEEGHNQ LDLSFTKLLD RIDVQCQRAS ALEACTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-681938722357Auxin response factor 1
4ldy_B3e-681938722357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008550.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505328.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A498J8550.0A0A498J855_MALDO; Multifunctional fusion protein
STRINGXP_009367333.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-168auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]