PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008716.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 225aa    MW: 25128.9 Da    PI: 9.9527
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008716.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47e-15135219296
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +k++++s+v+   +l l  +f+++h  +    ++  +tl de+g ++   +  rk++    l++GWk+F+ a++L +gD +vF+l++ ++f    kv
  Pbr008716.1 135 VKTMLQSHVTGGFWLGLQVSFCKNHlpK----GDEVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTF----KV 219
                  699*******************888443....4458***************656665....************************985555....44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-21127220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-17127219IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-24132219No hitNo description
PROSITE profilePS5086310.179134224IPR003340B3 DNA binding domain
SMARTSM010199.0E-19134223IPR003340B3 DNA binding domain
PfamPF023622.4E-12135218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVMAKSKLSY EESRQQRLEE NKKRMEALNL PMLAQALNKT PNSPKPSPMK RAGKPRTYEV  60
QMVEVRRSTR VANRPAPDYK EVVAERVMIP RRSYATNRHR DVANRVYASD EARAAAMVKA  120
DELEASLGSD HPTLVKTMLQ SHVTGGFWLG LQVSFCKNHL PKGDEVMTLI DEDGDEYPTI  180
YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRPTTFKVI DKAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008716.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367366.11e-164PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_009367367.11e-164PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ42e-74Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A498HT621e-157A0A498HT62_MALDO; Uncharacterized protein
STRINGXP_009367366.11e-163(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-77B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]