PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr008717.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Protein Properties

Length: 223aa MW: 25405.2 Da PI: 10.2388

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008717.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.4	3.3e-15	133	219	2	94
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k +++s+v+ +l lpk f++++ +k ++ +tl de+ + ev + +k++ l++GW++F+ ++gL +gD +vF++++ ++ + ++ Pbr008717.1 133 VKPMLQSHVTGGFWLGLPKYFCSKNL-PK-RDDIVTLIDEDEDECEVIYLAEKRG----LSGGWRGFAIDHGLVDGDALVFQRIRPKTLKVWL 219 68999***************9994.43.4558***********545554....9********************88766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.49E-20	126	218	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.3E-16	128	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.02E-22	130	217	No hit	No description
PROSITE profile	PS50863	9.798	132	222	IPR003340	B3 DNA binding domain
SMART	SM01019	9.9E-17	132	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.2E-13	133	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVAPKLSYEE SRRQRMEENK KRMEALNLPM LAQSLKKNSN SPKPSPMKRA KARTVEKQLV 60 EVRRSSRVAN LPTPVYKEVK VVVDREMRPR RYSTNRHRDL SNRVYASDEA RDDATARAEA 120 LESGLGSSYP TMVKPMLQSH VTGGFWLGLP KYFCSKNLPK RDDIVTLIDE DEDECEVIYL 180 AEKRGLSGGW RGFAIDHGLV DGDALVFQRI RPKTLKVWLQ VS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008717.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009367365.1	1e-161	PREDICTED: B3 domain-containing protein At3g19184-like
Refseq	XP_018505339.1	1e-161	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q69V36	2e-71	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A498HR42	1e-142	A0A498HR42_MALDO; Uncharacterized protein
STRING	XP_009367365.1	1e-160	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-62	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]