PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008788.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 353aa    MW: 38638.7 Da    PI: 6.268
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008788.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.6e-17239273135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR g  g+ktLCnaCG++y++ +l
  Pbr008788.1 239 CLHCATDKTPQWRTGAMGPKTLCNACGVRYKSGRL 273
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.136233269IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-15235297No hitNo description
Gene3DG3DSA:3.30.50.107.2E-14235270IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.33E-13238285No hitNo description
PfamPF003201.5E-14239273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEAPEYYQNS FCPQFAPEKR HPFDNNKTAV GSGGGDHFKV EDLLDFSNDD DAVITDGGCP  60
AAAVFENAAG NSTDSSTLTV LDSCNSSSLS GSEPLFGSRN LADGPLSSEL CVPYDDLAEL  120
EWLSNFVEES FSSEDLQRLQ LISGMKARPD EAASETRLLQ PDPXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXSAAE AATPLPQPSS TGKKTVKSAP KKKESQEGSG GGHGDGRKCL  240
HCATDKTPQW RTGAMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH SNSHRKVLEL  300
RRQKEMGRAQ QTYIHQVPPP HHHHHQNMVF DVSNGGDYLI HQHVGPDFRQ LI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367498.10.0PREDICTED: GATA transcription factor 9
TrEMBLA0A498HUW20.0A0A498HUW2_MALDO; GATA transcription factor
STRINGXP_009367498.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-70GATA transcription factor 12