PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008912.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 106aa    MW: 12316.7 Da    PI: 11.0359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008912.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.6e-161150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i ++  r+ tf kR+ng++KK +ELS+LC+++ + +++s+
  Pbr008912.1 11 IRDDASRKATFKKRKNGLMKKVKELSILCGIDSSAVVYSQ 50
                 889999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.292150IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-23185IPR002100Transcription factor, MADS-box
CDDcd002664.11E-23285No hitNo description
PRINTSPR004041.3E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MARKKIKLAY IRDDASRKAT FKKRKNGLMK KVKELSILCG IDSSAVVYSQ YDTKPEVGPN  60
PDVTRRIIAR FKQMQEMDKR KNMMNQKSIL RQQIVKVEEQ LKKTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIKLAYIRDDASRKATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008912.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343298.21e-52agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-26AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A498JCJ73e-51A0A498JCJ7_MALDO; Uncharacterized protein
STRINGXP_009351024.13e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1782336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-29AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]