PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009057.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 356aa    MW: 39907.3 Da    PI: 10.1022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009057.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.5e-31289346359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Pbr009057.1 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 346
                  99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-17239285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-33275347IPR003657WRKY domain
PROSITE profilePS5081130.067282348IPR003657WRKY domain
SuperFamilySSF1182903.79E-27285347IPR003657WRKY domain
SMARTSM007742.0E-38287347IPR003657WRKY domain
PfamPF031063.0E-27289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEVEEANKT AVESCHRVLS LLSQPQEQVQ YRNLMVETGK AVSRFKKVVS ILNTGLGHAR  60
VRKLKKLQIP FPERILLDNP MSIADHPSKT PHFLQSSFPE NPTQDLSLDV KSALCLGSPS  120
LELSANGKTP IHPAQQVPPA QYHLLQQQRQ HQQHQQQQQL QQRMLLQQHQ MKQQTEMMYR  180
RSNSGINLNF DSSSCTPTMS STRSFISSLS IDGSVANFDG NSFHLLGAPL SSDQNSQHKR  240
KCSARGDDGS VKCGGSSGRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPSMLIVTYE GEHNHPRIPS QSTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202833451071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009057.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367731.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_009367732.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_009367733.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_009367734.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-127WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A498IXS80.0A0A498IXS8_MALDO; Uncharacterized protein
TrEMBLD9ZJF90.0D9ZJF9_MALDO; WRKY domain class transcription factor
STRINGXP_009367731.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-118WRKY DNA-binding protein 21