PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009406.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 219aa    MW: 24390.3 Da    PI: 4.3169
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009406.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.9e-3871071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v+ i +lqqq++ l++e+++l
  Pbr009406.1   7 SCGACKFLRRKCTSECIFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCVSQIYALQQQVAYLQEEIETL 104
                  6************************9789******************************************************************999 PP

       DUF260  98 kee 100
                  +++
  Pbr009406.1 105 GSQ 107
                  876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9146108IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAGLGSSCGA CKFLRRKCTS ECIFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITMSY EALARMRDPV YGCVSQIYAL QQQVAYLQEE IETLGSQMID FATFHPGNSN  120
TFVDQLQVFS QHDAVDTQHI QNQLPESPIF PQIGSAAANQ GFNGEMDIEM PPLQEWEEVS  180
LFGDHSTPDP LKRFLESMEQ DNLGNNPWPN ETATWDLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531217124LOB family transfactor Ramosa2.1
5ly0_B2e-3531217124LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009406.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345549.11e-165PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS83e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A498KMD21e-159A0A498KMD2_MALDO; Uncharacterized protein
STRINGXP_009345549.11e-164(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-58LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]