PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009477.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 283aa    MW: 32400.1 Da    PI: 5.8433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009477.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r    ++t+ q+ s+ qky
      Pbr009477.1 115 PWTQEEHRRFLMGLLKYGKGDWRNISRNYVVTKTPTQVASHAQKY 159
                      7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.171064IPR017884SANT domain
SMARTSM007178.8E-81163IPR001005SANT/Myb domain
CDDcd001672.38E-61460No hitNo description
SuperFamilySSF466897.9E-101468IPR009057Homeodomain-like
PROSITE profilePS5129417.128108164IPR017930Myb domain
SuperFamilySSF466897.9E-16110164IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-17112163IPR006447Myb domain, plants
SMARTSM007171.9E-9112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-10113159IPR009057Homeodomain-like
CDDcd001673.96E-9115160No hitNo description
PfamPF002491.6E-10115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
METLYFFQES QGSEWTKEEN KMFESALAMF DEKSPDRFQR VAEMIPGKTV IDVMKQYQEL  60
EEDVCEIESG RVPIPPGYPQ SYFRLELGDD RDFDANRKRP LATRGSEQER RKGIPWTQEE  120
HRRFLMGLLK YGKGDWRNIS RNYVVTKTPT QVASHAQKYF MRQHSGGKDK RRPSIHDITT  180
VNLTSDAQSE TNMPPSDQFL PEQKSTESLN VLLDWNAADD EGAAMGFDST HGNLFDPSPY  240
DVDADGIKMQ PQKLCSRAHY AAHATPQNSL YLMQSARHQI HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-121275871RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344476.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-91DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD9ZJ700.0D9ZJ70_MALDO; MYBR domain class transcription factor
STRINGXP_009344476.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]