PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009547.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 248aa    MW: 27896.7 Da    PI: 9.7255
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009547.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.83.4e-1416100186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ +laLi+a  ++  +l+rg l++++W+ev++++       +++f+ + +qCk++++ l+k+yk +k   ++      st+p++++l+
  Pbr009547.1  16 CWSEDATLALITAWGDRYLHLNRGILRQKDWKEVADAVnshqngGAKPFK-KDVQCKNRIDTLKKKYKLEKSKPGQ------STWPFYRRLH 100
                  7*************************************998665555555.579***************9999887......58*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2415102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDRLNRTHAP AGRDDCWSED ATLALITAWG DRYLHLNRGI LRQKDWKEVA DAVNSHQNGG  60
AKPFKKDVQC KNRIDTLKKK YKLEKSKPGQ STWPFYRRLH SIICSTPSNT AGATKSNPPI  120
LALSAKSPDP NTNPLGGSTD SSIRHDDGDD EAAVFEGGAA CRELARAISK FGEMYERIEN  180
SKRKQMMELE KQRMEFDKEL ALQRLSMFMD VQVELGKKMK HSKYSHSSGA AIVQNFNFNL  240
NLFMGFI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009547.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345206.11e-173PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG82e-29ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A498KNU11e-166A0A498KNU1_MALDO; Uncharacterized protein
STRINGXP_009345206.11e-173(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.13e-55sequence-specific DNA binding transcription factors