PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009571.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 399aa    MW: 43706.1 Da    PI: 4.6519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009571.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1879129155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p     r  r +lg+f ta +Aa a+++a+k+++g
  Pbr009571.1  79 CNYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFPTAIDAALAYDEAAKAMYG 129
                  56*****999.**********82....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-3079139No hitNo description
PfamPF008475.0E-1379129IPR001471AP2/ERF domain
PROSITE profilePS5103221.10180137IPR001471AP2/ERF domain
SMARTSM003808.2E-3380143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2980138IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1980138IPR016177DNA-binding domain
PRINTSPR003672.7E-98192IPR001471AP2/ERF domain
PRINTSPR003672.7E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGAYDQGANM SSLPLDSSRK RKTRSRRDGN SVAETLEKWK EYNKKLESGN NEGKTRKVPA  60
KGSKKGCMKG KGGPENARCN YRGVRQRTWG KWVAEIREPD RGSRLWLGTF PTAIDAALAY  120
DEAAKAMYGA GARLNLPHAA NYHPSSSLET SSVATPSGSS AVATPGCSTP TSTSSRSEVC  180
GDEDSKLFLN VKNEDGEGES RMYPWSTAVP QASGMVKPEI IEDFTMDYLR NNQQQPVVKP  240
EAGVEDHNWN GGDGFIGDYS ENFTTDELFD MDEMFDVNEL LMPSDDISLC NSGSEQVWRA  300
DVGQSGMETL SSERPSNLLY QLQFPDAKLL GSLQHMEHAP LNFEYGFDFK KQEKEGSNHT  360
GQDDQGCFNL GLSDLDWGGF TGGITQSGDG GYNYSMEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1780137260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKT
22027RKTRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7905260.0JQ790526.1 Malus sieversii DREB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345422.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A3Q8N9B40.0A0A3Q8N9B4_9ROSA; Dehydration-responsive element-binding protein
TrEMBLI1Z6730.0I1Z673_MALDO; Dehydration-responsive element-binding protein (DREB2) (Fragment)
TrEMBLT1Q0270.0T1Q027_9ROSA; DREB2 transcription factor
STRINGXP_009345422.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.13e-43DRE-binding protein 2A