PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr009810.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HB-PHD

Protein Properties

Length: 1021aa MW: 111729 Da PI: 4.6615

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr009810.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.1	3.6e-14	878	928	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ + ++L +lF++n+yp+++++e LA++lg+ +qV+ WF N R +k Pbr009810.1 878 KLGEAAAQRLSKLFKENHYPDRSMKESLAQELGIMAKQVSKWFENARHCWK 928 55667889***************************************9887 PP
2	PHD	36.4	1.2e-12	500	555	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k Pbr009810.1 500 FCAKCGSkdVSLQNDIILCDGaCDRGFHQFCLEPSLLSEDIPPDdeGWLCPGCDCK 555 6999964444****66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.53E-13	490	558	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.5E-12	496	555	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.95	498	555	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	5.3E-10	500	555	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	5.1E-9	500	553	IPR001965	Zinc finger, PHD-type
CDD	cd15504	9.86E-26	500	552	No hit	No description
PROSITE pattern	PS01359	0	501	552	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	5.4E-14	846	928	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-11	859	928	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.475	870	930	IPR001356	Homeobox domain
SMART	SM00389	3.1E-10	872	934	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-11	879	928	IPR001356	Homeobox domain
CDD	cd00086	9.53E-10	885	928	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence Send to blast
MADTAQLDIP PDCDSSHATK CQEEGTSGQM HEIGSERQCS EPTKQNIGCA IVQNELREIC 60 NAGEQSQSLS ENVTENSHLE QLGLPSEDVS KSSQSGAENV FAKQGYQSIS GYKQDESFQT 120 TAAVFPCTMK DQLQSFSGNV SKNSVIDQME MPCEDLGVNS PTHKSSCSGQ LPLEQKNDCG 180 FGTSSSELAE EKHPSASDHV QNDQLQAIIQ VPICGSNEHL QSSSENVNRT SLNKQAGLPP 240 EDLSKTCQTD KVSCCNQTTL QEINEFGCGS VHGEPETQKY QLDSVPAHNN EVTTTEAAPS 300 SIVFEQSRPC IEAMTRDSPT GHLELPLEDA SKSPPIDKEM EPLPADVTQN SSLEKTEKPS 360 KNAPKEKQNP KSRKKKYVSK SSIGSDRVLR SKTGEKTKNP KLSNDVSTLE SSNSVANPNL 420 LNRISYEKSL IDAYSGEGWK GSSLEKLKPE KELQRATSEI LRRKLKIRDL FQRLDSLCSE 480 GMFPESLFDS EGQIDSEDIF CAKCGSKDVS LQNDIILCDG ACDRGFHQFC LEPSLLSEDI 540 PPDDEGWLCP GCDCKVDCFD LLNESQGTDL SVADSWEKVF PEAAAAASGH NQEHTHGLPS 600 DDSDDNDYDP DGPETDDEVQ GEESSSDDES KYASASDGLE TPKNNDEQDF GLPSDDSEDD 660 DYNPDAPEVT DELKKESSSS DFTSDSEDLG ASLDDNNMSA EDDESGPLRG SGKQSSRHGQ 720 KKQPLKDELL SLLESGPGQG GAAPVSGKRH IERLNYKKLH DETYGNVRTD SSDDEEWNDT 780 AGPRKRKKVT TQAPTMSPNG DSSNVKNVMI TNNIKHDLDE NENTPKRTPR GNKNTPKRAH 840 RKSKVEDTSN LSNKSQKGST QSASTSEKGG SSRSTYRKLG EAAAQRLSKL FKENHYPDRS 900 MKESLAQELG IMAKQVSKWF ENARHCWKVS VDKSAAGNGT PLPQTNGKQL EQGDTPIGDS 960 DRGGAQNKEL PRTDDRKRKA MTPNNRKRKR KSDDPDPENK TPETNRKGTG VMTRQRKSIA 1020 *

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence Send to blast

MADTAQLDIP PDCDSSHATK CQEEGTSGQM HEIGSERQCS EPTKQNIGCA IVQNELREIC  60
NAGEQSQSLS ENVTENSHLE QLGLPSEDVS KSSQSGAENV FAKQGYQSIS GYKQDESFQT  120
TAAVFPCTMK DQLQSFSGNV SKNSVIDQME MPCEDLGVNS PTHKSSCSGQ LPLEQKNDCG  180
FGTSSSELAE EKHPSASDHV QNDQLQAIIQ VPICGSNEHL QSSSENVNRT SLNKQAGLPP  240
EDLSKTCQTD KVSCCNQTTL QEINEFGCGS VHGEPETQKY QLDSVPAHNN EVTTTEAAPS  300
SIVFEQSRPC IEAMTRDSPT GHLELPLEDA SKSPPIDKEM EPLPADVTQN SSLEKTEKPS  360
KNAPKEKQNP KSRKKKYVSK SSIGSDRVLR SKTGEKTKNP KLSNDVSTLE SSNSVANPNL  420
LNRISYEKSL IDAYSGEGWK GSSLEKLKPE KELQRATSEI LRRKLKIRDL FQRLDSLCSE  480
GMFPESLFDS EGQIDSEDIF CAKCGSKDVS LQNDIILCDG ACDRGFHQFC LEPSLLSEDI  540
PPDDEGWLCP GCDCKVDCFD LLNESQGTDL SVADSWEKVF PEAAAAASGH NQEHTHGLPS  600
DDSDDNDYDP DGPETDDEVQ GEESSSDDES KYASASDGLE TPKNNDEQDF GLPSDDSEDD  660
DYNPDAPEVT DELKKESSSS DFTSDSEDLG ASLDDNNMSA EDDESGPLRG SGKQSSRHGQ  720
KKQPLKDELL SLLESGPGQG GAAPVSGKRH IERLNYKKLH DETYGNVRTD SSDDEEWNDT  780
AGPRKRKKVT TQAPTMSPNG DSSNVKNVMI TNNIKHDLDE NENTPKRTPR GNKNTPKRAH  840
RKSKVEDTSN LSNKSQKGST QSASTSEKGG SSRSTYRKLG EAAAQRLSKL FKENHYPDRS  900
MKESLAQELG IMAKQVSKWF ENARHCWKVS VDKSAAGNGT PLPQTNGKQL EQGDTPIGDS  960
DRGGAQNKEL PRTDDRKRKA MTPNNRKRKR KSDDPDPENK TPETNRKGTG VMTRQRKSIA  1020
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	783	787	RKRKK
2	976	990	KRKAMTPNNRKRKRK
3	985	990	RKRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr009810.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018501870.1	0.0	PREDICTED: homeobox protein HAT3.1-like
TrEMBL	A0A498JR81	0.0	A0A498JR81_MALDO; Uncharacterized protein
STRING	XP_009351161.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8437	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-114	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain