PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009877.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 295aa    MW: 31513.2 Da    PI: 5.1915
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009877.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.3e-16201237135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pbr009877.1 201 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGS 237
                  *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-1165100IPR010399Tify domain
PROSITE profilePS5132014.91165100IPR010399Tify domain
PfamPF062001.0E-126899IPR010399Tify domain
PfamPF062033.0E-16132174IPR010402CCT domain
PROSITE profilePS5101713.245132174IPR010402CCT domain
SMARTSM004011.9E-10195250IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-10198242No hitNo description
Gene3DG3DSA:3.30.50.102.7E-13199237IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.23E-13200236No hitNo description
PfamPF003209.8E-14201237IPR000679Zinc finger, GATA-type
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAESDHQDSM YSTGGGVTQS NQVDDQDDDV EEPIDNPNIR FEDSTAIPPN QLYLPSSEYP  60
PPPAANGASD QLTLSFQGEV YVFDAVSPDK VQAVLLLLGG YEIPSGIPSM GPVPLNQQGM  120
NDLPAKPIQP QRAASLSRFR EKRKERCFDK KIRYTVRKEV ALRMQRKKGQ FTSSKASSDD  180
GGPASSTQAS GQDESMRETS CTHCGISSKS TPMMRRGPAG PRTLCNACGL KWANKGSLTG  240
VPKVLNVGIH DPSLKGIEQS NGEVQDSDVV AMGANVAPSS ANGDNPAMTV DRKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368311.10.0PREDICTED: GATA transcription factor 18-like
SwissprotQ8GXL76e-72GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A498IT690.0A0A498IT69_MALDO; Uncharacterized protein
STRINGXP_009368311.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-76ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]