PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009954.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 466aa    MW: 50944 Da    PI: 9.3112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009954.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0578100123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Pbr009954.1  78 FVCEICNKGFQRDQNLQLHRRGH 100
                  89*******************88 PP
2zf-C2H211.70.00082155177123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Pbr009954.1 155 WKCDKCSKIYAVQSDWKAHSKTC 177
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.56E-677100No hitNo description
PfamPF121717.3E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94978100IPR007087Zinc finger, C2H2
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.56E-6150175No hitNo description
SMARTSM00355180155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFPISMSNST SLSEEANSVS SDFAAALNPL LLSTNISSHQ SDQPPNKIKK KRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKDQIRKRAY  120
VCPEPSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQFAT ATTTTAAITP QISLFPFPTH  240
QQQHFTNPNT PLPPFTTISL TPWDLPQSHQ NPNTNPTQNS PLHHLIKPES HRHFPPRPPQ  300
PQQPHNGLIT SPFQGLHVST QPNSNPSTSS AHLSATALLQ KAAAVGAAAA QQGQSAGLAV  360
GEFGTASHMI STEYLGGFTS GDVSTWRKTD SLTRDFLGLN GDGTGNNNNN NNVRAVHVKD  420
MLPYAGGVGF HQPPSERLGG LDSQLKPQGF GFAETTTASE TWGDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36151215367Zinc finger protein JACKDAW
5b3h_F3e-36151215367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009954.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350365.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-125IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A498IQ980.0A0A498IQ98_MALDO; Uncharacterized protein
STRINGXP_009350365.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-112indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]