PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010138.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 272aa    MW: 30240.4 Da    PI: 8.9479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010138.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-1974123255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t e Aa a+++a+++++g
  Pbr010138.1  74 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETDEAAALAYDEAALRFKG 123
                  7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-3273132IPR001471AP2/ERF domain
PfamPF008476.1E-1474123IPR001471AP2/ERF domain
SMARTSM003801.5E-3674137IPR001471AP2/ERF domain
CDDcd000182.47E-2074132No hitNo description
PROSITE profilePS5103224.80374131IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2174132IPR016177DNA-binding domain
PRINTSPR003679.7E-147586IPR001471AP2/ERF domain
PRINTSPR003679.7E-14113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MIFEPFFSSA RSQHEMSAMV SALSQVLGST NNQTPAVQVP MEPPLIAPQS SAMESHDDQS  60
PQQARDQGTA RRRHYRGVRQ RPWGKWAAEI RDPKKAARVW LGTFETDEAA ALAYDEAALR  120
FKGSKAKLNF PERVQGRITE LGSLTATSTQ QNLPAGASQR VITDHHHPLS DHQYHLQAFP  180
NNVVTRPHDQ YAQYFRSGHE CISYDLPATL YERERFATQT SETTTSSSSL LPFLPSHQQG  240
DQQHPLGYSM PGFGSSSSSS NPPPTNRNRR P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2670134166ATERF1
3gcc_A7e-2670134166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010138.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373652.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH543e-49EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A498I6U61e-153A0A498I6U6_MALDO; Uncharacterized protein
STRINGXP_009373652.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]