PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010321.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29192.2 Da    PI: 8.4537
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010321.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.32.7e-101051344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +en++ r+  f kR++ +l K eE+ +LC++++  i++++++
  Pbr010321.1 10 VENDRARKDCFRKRKANLLRKMEEITTLCQVNAFAIVYGQDN 51
                 69*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-8159IPR002100Transcription factor, MADS-box
CDDcd002661.72E-16184No hitNo description
PROSITE profilePS5006612.054151IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-17392IPR002100Transcription factor, MADS-box
PfamPF003194.1E-111051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGKKVKLAWV ENDRARKDCF RKRKANLLRK MEEITTLCQV NAFAIVYGQD NNDPTLWPTH  60
PEVEELIKRF FSIPNVKRYK KSLNQETYLL ERAVKFRERI KKINKQIREM KGNKLMHQVH  120
EGKSLNEFER SDMTDLVSFC KEKMYGIKKL VAHLEKEDLN SEQGTSNYEK GKDIENTAGN  180
IAANGIENSG DALGLGLMSH SGTGKEVGQP DVSHEMVKQS ENVTGKKGER IRLMGVAIEV  240
SSVADDDDAE DPLQHGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010321.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349916.10.0PREDICTED: agamous-like MADS-box protein AGL36
TrEMBLA0A498I2E61e-163A0A498I2E6_MALDO; Uncharacterized protein
STRINGXP_009349916.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-28AGAMOUS-like 48