PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010322.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 259aa MW: 28087.6 Da PI: 11.1605

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010322.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.5	1.2e-29	91	146	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ e++ ++ rkpy+heSRh+hA+rRpRg+gGrF Pbr010322.1 91 GPIYVNAKQYHGIIRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 146 69*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-32	88	149	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.387	89	149	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-26	92	146	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-23	92	114	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-23	123	146	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGNPVASRNL LRGNSPTPGT ISSPATKLAG QGTEQELEKG HTNLFTIFPG DGQKSQAAIG 60 PPGKYRGHFE LGFSQPMGRI MLPLNLTTDE GPIYVNAKQY HGIIRRRQSR AKAVIENRAA 120 RLRKPYMHES RHRHAMRRPR GCGGRFLNTK TMNNGTKGTE GKQGGDGQLF RLSGSRSPEV 180 LQSDSGTLNS SRETNGSSSN ISGSEVSSMY SRGDLDRFSI NHLGHSLHSL SNMMDSARGM 240 VIPTKWVAAG DNRCNLKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-18	90	154	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	RHRHAMRRPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010322.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008391985.1	1e-150	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A498I4M8	1e-154	A0A498I4M8_MALDO; Uncharacterized protein
STRING	XP_008391985.1	1e-149	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	7e-39	nuclear factor Y, subunit A10