PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010651.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

YABBY

Protein Properties

Length: 153aa MW: 17001 Da PI: 7.9181

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010651.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	182.3	2.7e-56	6	150	4	159
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + ++eq+Cy+ CnfC+ +lavsvP +slf +vtvrCG Ct+l svn+a a q l+ ++ ++++ + +++n++ ++++ ++++++ Pbr010651.1 6 DVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGRCTNLWSVNMAAAFQSLSWQDV--------QAQNYNCNSQNYRIDSGSSSKCNKKNAT--- 92 5689*******************************************9999999985........5566666666665554444333333333... PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + +++++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn Pbr010651.1 93 RDPTSDHATEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 150 22333333334569*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-60	8	150	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-6	106	147	IPR009071	High mobility group box domain
CDD	cd00084	3.21E-4	115	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MTSCVDVATE QLCYIPCNFC SIVLAVSVPC SSLFDIVTVR CGRCTNLWSV NMAAAFQSLS 60 WQDVQAQNYN CNSQNYRIDS GSSSKCNKKN ATRDPTSDHA TEERGVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN DP*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010651.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009368867.1	1e-108	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-68	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D9ZJG6	1e-102	D9ZJG6_MALDO; YABBY domain class transcription factor
STRING	XP_009368867.1	1e-108	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-71	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]