PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010772.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 255aa MW: 27736.6 Da PI: 6.0236

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010772.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Pbr010772.1 96 FSCNYCKRKFYSSQALGGHQNAH 118 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.78E-6	94	124	No hit	No description
PROSITE profile	PS50157	11.406	96	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MLTQNLNLEF ENDSEVTGQV TSSIPLQEES PDPSKDSTTT SSCLTNQNHQ QQDPGPVSLD 60 LTLQFSSGDT ELKGTGETSS EAVAPPTSEG TIPRVFSCNY CKRKFYSSQA LGGHQNAHKR 120 ERTMAKRAMR MGMFPDRYTS LASLPLHGSA ASAFRSLGIQ AHSAVHQNTM ITSDHQRFPV 180 PDTRGVARFH QGYFGVPMFM DEDDVGMFWP GSFRQVGEEA GGHQLAQNPN MNTGTSMEPR 240 NSTSSSSPDL SLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010772.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009368642.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_009368643.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_009368646.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_018505614.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_018505615.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_018505618.1	0.0	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	1e-47	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	D9ZIT1	1e-169	D9ZIT1_MALDO; C2H2L domain class transcription factor
STRING	XP_009368642.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-47	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]