PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010809.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 354aa    MW: 39473.8 Da    PI: 4.552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010809.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17115165155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +g+W+AeIrdp     r +r  lg+ +taeeAa  +++a+ kl+g
  Pbr010809.1 115 KKYRGVRQRP-WGKWAAEIRDPA----RrQRLGLGTLDTAEEAAMVYDNAAIKLRG 165
                  59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-31115172No hitNo description
Gene3DG3DSA:3.30.730.105.8E-27116173IPR001471AP2/ERF domain
PROSITE profilePS5103221.97116173IPR001471AP2/ERF domain
PfamPF008473.8E-11116165IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-19116173IPR016177DNA-binding domain
SMARTSM003801.5E-33116179IPR001471AP2/ERF domain
PRINTSPR003671.5E-10117128IPR001471AP2/ERF domain
PRINTSPR003671.5E-10155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MESSILCPIK YSEHRSTTKK LMKPRKKAAS ESASTVTRRI VRISVTDPDA TDSSSDEEEE  60
FFGRQRVKHY INEINIETDF RNSLVINNAR KRPAAEIPVN RRPMKNAISP TNGGKKYRGV  120
RQRPWGKWAA EIRDPARRQR LGLGTLDTAE EAAMVYDNAA IKLRGPDALT NFVAPPQKEE  180
EKPEPPVIEP IEVGTNGTTS ASGYDSGSES HNLASPTSVL HFRSQPIIEE ADKPQKFQVS  240
NRVDEDEDET ETGTNILSDD LSYFGNYLPL DLPYFDDAFS FPAPESPLFD SPLFFDDGPA  300
AAASLPDCFM KDDFSELFRD TYDTSLSHTT SPMFQGDDYF QDILFGSDPL VVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19114172362ATERF1
3gcc_A2e-19114172362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324370.0GU732437.1 Malus x domestica AP2 domain class transcription factor (AP2D13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368689.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLD5L0Z70.0D5L0Z7_MALDO; AP2 domain class transcription factor
STRINGXP_009368689.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-48cytokinin response factor 4