PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010927.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 242aa    MW: 27339.1 Da    PI: 9.5546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010927.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.21.8e-1216100186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W +  + aLi+a  ++  +l+ g l+++ W+ev++++   + +g+  +++ +qC+++++ l+k+yk +k   +       s++p++++l+
  Pbr010927.1  16 CWNEADTEALITAWGDRYLHLNHGILRQKEWKEVADAVnstQNGGVkpSKTDVQCRNRIDTLKKKYKLEKSKPGP------SKWPFYRRLH 100
                  7*************************************99977777557899***************99988886......58*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2414102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNRRTRTHAP AGREDCWNEA DTEALITAWG DRYLHLNHGI LRQKEWKEVA DAVNSTQNGG  60
VKPSKTDVQC RNRIDTLKKK YKLEKSKPGP SKWPFYRRLH SLICSTPSNA AVSTESKPPI  120
LALNGKSPDP SPYPLEGSRR DDGGDEAAGL SGGAVCRELA RAISRFGEMY ERIENSKRKQ  180
MMELEKQRME FDKELELQRL NMFMDVQVEL GKKMKLSTYS HSSGPAIAES FMSSFLVIFD  240
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369199.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A498JHW11e-162A0A498JHW1_MALDO; Uncharacterized protein
STRINGXP_009369199.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.23e-55sequence-specific DNA binding transcription factors