PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010978.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 138aa MW: 14759.5 Da PI: 4.6986

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010978.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.5	4.6e-19	1	56	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++e Pbr010978.1 1 MLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRDE 56 67899**********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.611	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-17	1	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MLMEVPETQR ADAANSLVYE ANVRLRDPVY GCMGAISALQ QQVQSLQAEL NAVRDEILKY 60 KYREANLLPS NSHHMALFST SGAVSAASLP QTPQPTPPPP PPPPMPPTSS SSSMYTNQQT 120 SAADYSSLSS ENVSFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-19	1	70	55	124	LOB family transfactor Ramosa2.1
5ly0_B	1e-19	1	70	55	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010978.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369256.1	3e-94	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-31	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A498JI09	3e-90	A0A498JI09_MALDO; Uncharacterized protein
STRING	XP_009369256.1	1e-93	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-31	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]