PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011071.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 509aa MW: 57069.3 Da PI: 6.0484

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011071.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.5	7.9e-109	146	502	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ecA a+s ++l +a+++L +l ++asp+g + +R++ayf +A+a+r+++s+ + ++ l +++ +a+++f+ +sP++kf+h+t Pbr011071.1 146 LITLLFECAVAISVDNLPEAHRMLLELTHMASPYGpSCAERVVAYFSKAMASRVVNSWLGNCSPLVN-------YKSVHSAFQVFNTISPFVKFAHFT 236 5789*****************************9999*************77776655443.......34456899************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp+lR+Tgvg s+e l etg++L++fA++lg++fef + +++++ +++ ++ + Pbr011071.1 237 SNQAILEAFHHRDRVHILDLDIMQGLQWPALFHILATRMEGPPHLRMTGVGT----SSEILLETGKQLSNFAKRLGLSFEFFP-IVRTVGEVDASMVQ 329 ************************************************....99*********************.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 v++gE+laV++ h+l+d ++s + +L+l+ +l P++v++veq+++h s+sFl+rf+ +l+yys++fdsle+ lp+++ r+kvE+ ++ re Pbr011071.1 330 VEQGETLAVHWLQ--HSLYDATGSDWK----TLRLIEELAPRIVTLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLPSDNPSRHKVEHGMFYRE 420 ********9..999999999999....******************.899************************************* PP GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i n++a g +r + ++++Wr+ l++ + F +v++s + ++qa+l+l++++ +gy++ + +g++ lgWkd +L+++SaW+ Pbr011071.1 421 INNILAIGGPARSGED-KFRQWRSELGArSEFMQVEMSGNSMAQAQLILNMFPpTHGYSLVQGDGTIGLGWKDTSLYVASAWT 502 *******77665.5****8659**************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.564	120	481	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-106	146	502	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MAHGTVNIIQ SHESWINYPN SNVTGFENNP ISNPKPVENR FINLERSELS QWVEHITKQL 60 IDDLPEPATT NTASADMLQT SEDYFVPSSL SADLISPTKV PRRSYGEHEH HELQWGNELQ 120 LHADNNDVRA RGGNNMSKLD EHGLTLITLL FECAVAISVD NLPEAHRMLL ELTHMASPYG 180 PSCAERVVAY FSKAMASRVV NSWLGNCSPL VNYKSVHSAF QVFNTISPFV KFAHFTSNQA 240 ILEAFHHRDR VHILDLDIMQ GLQWPALFHI LATRMEGPPH LRMTGVGTSS EILLETGKQL 300 SNFAKRLGLS FEFFPIVRTV GEVDASMVQV EQGETLAVHW LQHSLYDATG SDWKTLRLIE 360 ELAPRIVTLV EQDMSHSGSF LDRFVGSLHY YSTMFDSLES YLPSDNPSRH KVEHGMFYRE 420 INNILAIGGP ARSGEDKFRQ WRSELGARSE FMQVEMSGNS MAQAQLILNM FPPTHGYSLV 480 QGDGTIGLGW KDTSLYVASA WTCSHASR*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MAHGTVNIIQ SHESWINYPN SNVTGFENNP ISNPKPVENR FINLERSELS QWVEHITKQL  60
IDDLPEPATT NTASADMLQT SEDYFVPSSL SADLISPTKV PRRSYGEHEH HELQWGNELQ  120
LHADNNDVRA RGGNNMSKLD EHGLTLITLL FECAVAISVD NLPEAHRMLL ELTHMASPYG  180
PSCAERVVAY FSKAMASRVV NSWLGNCSPL VNYKSVHSAF QVFNTISPFV KFAHFTSNQA  240
ILEAFHHRDR VHILDLDIMQ GLQWPALFHI LATRMEGPPH LRMTGVGTSS EILLETGKQL  300
SNFAKRLGLS FEFFPIVRTV GEVDASMVQV EQGETLAVHW LQHSLYDATG SDWKTLRLIE  360
ELAPRIVTLV EQDMSHSGSF LDRFVGSLHY YSTMFDSLES YLPSDNPSRH KVEHGMFYRE  420
INNILAIGGP ARSGEDKFRQ WRSELGARSE FMQVEMSGNS MAQAQLILNM FPPTHGYSLV  480
QGDGTIGLGW KDTSLYVASA WTCSHASR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-141	138	502	11	379	Protein SCARECROW
5b3h_A	1e-141	138	502	10	378	Protein SCARECROW
5b3h_D	1e-141	138	502	10	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011071.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369454.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	1e-138	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A498IY61	0.0	A0A498IY61_MALDO; Uncharacterized protein
STRING	XP_009369454.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11787	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-140	GRAS family protein