PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011102.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 252aa    MW: 28351.7 Da    PI: 6.3116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011102.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-17106155355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +l+g
  Pbr011102.1 106 YRGVRRRP-WGKYAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFALRG 155
                  9*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-36105169IPR001471AP2/ERF domain
PROSITE profilePS5103223.103105163IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22105164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-29105164IPR001471AP2/ERF domain
CDDcd000186.90E-21106165No hitNo description
PfamPF008471.2E-12106155IPR001471AP2/ERF domain
PRINTSPR003674.6E-10106117IPR001471AP2/ERF domain
PRINTSPR003674.6E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEMESAFFHF SSPDFSSDSS FGSLHSFSWG DESLLLPFNS HELMNFPPFN INDSQDMLLY  60
DVVARGAKQT LVAQNEANSF NGVKEQEVTS ANNQTLEEKS TKEKAYRGVR RRPWGKYAAE  120
IRDSTRHGIR VWLGTFDSAE AAALAYDQAA FALRGSLAVL NFPAQVVQDS LQEIKYRHDE  180
ACSPVIALKR RHSMKRKSMH KKGNKPSQCT DQRKVQEVLP QNVMVLEDLG VEYLEELLDI  240
SSCGSNHWSP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-271061631572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011102.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369492.10.0PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-69ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A498IVL41e-155A0A498IVL4_MALDO; Uncharacterized protein
STRINGXP_009369492.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-56ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]