PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011104.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 146aa    MW: 16203.8 Da    PI: 9.1063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011104.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-161970256
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +g+++Ae rd  ++     r +lg+f taeeAa+a+++a+ +++g+
  Pbr011104.1 19 RYRGVRTRP-WGKFAAETRDlTRQ---GGRLWLGTFNTAEEAARAYDRAAFSMRGA 70
                 6*****999.*******9995533...38************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-211978IPR016177DNA-binding domain
PROSITE profilePS5103222.1551977IPR001471AP2/ERF domain
SMARTSM003801.1E-291983IPR001471AP2/ERF domain
CDDcd000183.17E-251977No hitNo description
Gene3DG3DSA:3.30.730.106.9E-291978IPR001471AP2/ERF domain
PfamPF008471.6E-121969IPR001471AP2/ERF domain
PRINTSPR003671.1E-102031IPR001471AP2/ERF domain
PRINTSPR003671.1E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MERGQSKGKA KEEGQRDVRY RGVRTRPWGK FAAETRDLTR QGGRLWLGTF NTAEEAARAY  60
DRAAFSMRGA LAILNFPSEY GLKDAGHSAA TTSSSFSSSS SSFPSSSRIH NKSRTEFGRE  120
IFEFECLDDS VLEDLLDFEN NSKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-311913114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011104.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505793.11e-101PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498IVC67e-79A0A498IVC6_MALDO; Uncharacterized protein
STRINGXP_009369516.11e-104(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]