PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011225.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 474aa    MW: 50201.9 Da    PI: 8.449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011225.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-114973327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 ++ C++++rtG+C yG+rC+++H++
  Pbr011225.1 49 EADCSYYLRTGICGYGSRCRYNHPR 73
                 579********************96 PP
2zf-CCCH39.59.3e-1395119327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtGtCk+G++Ck++H++
  Pbr011225.1  95 QPVCQYYMRTGTCKFGASCKYHHPK 119
                  689********************96 PP
3zf-CCCH36.39.7e-12141165327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C+++ +tG+Ck+G++CkF+H++
  Pbr011225.1 141 ERDCSYYVKTGQCKFGSTCKFHHPQ 165
                  789********************97 PP
4zf-CCCH391.4e-12298324127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++f+rtG Ck+G++C+++H+p
  Pbr011225.1 298 PGQPECQYFMRTGDCKFGSSCRYHHPP 324
                  5789*********************97 PP
5zf-CCCH35.41.7e-11346369326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +lC ++++ G Ck+G+ CkF H+
  Pbr011225.1 346 APLCTHYQQRGACKFGSACKFDHP 369
                  68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8174674IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-64673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-64974IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-94973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93992120IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-695119IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1095119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338138166IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5138165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6140166IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-7297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464297325IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403343371IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6343370IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9346369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6347373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5348368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MERYGRTAEG SQSDPSPEWN LPGPETGLEG SMRQLGLGTG ESYPERSNEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRSVVIG AARTGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ  120
GGSSDSPVSL NYYGYPLRPS ERDCSYYVKT GQCKFGSTCK FHHPQPAGIQ LPGPSPAPQV  180
SPVPATHTLY QNVQSPSVSS QQYGVVFARP PLTYVPSPYD QVLLSQGPIP FPGWNPYQAL  240
ASQLPSPSTQ SGVGARTLYT QLSPSAPAFT GMYQPMPLAS SLGLPTTSQK EQIFPERPGQ  300
PECQYFMRTG DCKFGSSCRY HHPPEVVQSK TTVLLSSSGL PLRPGAPLCT HYQQRGACKF  360
GSACKFDHPI GTLSYSPSAS SLADMPVAPY PVGSSIGTLA PSSSSSELRP ELSSSSGKDL  420
VSARMSSSLS TSSLSVGSTV SKGGVTPAGV QQSSQGSGPS SGSGNSTESH SSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011225.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369128.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-154C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A498HMT80.0A0A498HMT8_MALDO; Uncharacterized protein
STRINGXP_009369128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-128C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]