PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011414.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 221aa MW: 24551.7 Da PI: 4.7133

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011414.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.4	1.2e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+k+l +lp ++r+da+ ++ yeA ar++dPvyG+v+ i++lqqq++ l++e+++l Pbr011414.1 7 SCGACKFLRRKCTSECVFAPYFCYDQaADHFAAVHKVFGASNVSKMLLHLPVQNRSDAAITMSYEALARMHDPVYGCVSQIFALQQQVAYLQEEIETL 104 6**********************9789*****************************************************************99 PP DUF260 98 kee 100 +++ Pbr011414.1 105 GNQ 107 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.328	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MTGLGFSCGA CKFLRRKCTS ECVFAPYFCY DQAADHFAAV HKVFGASNVS KMLLHLPVQN 60 RSDAAITMSY EALARMHDPV YGCVSQIFAL QQQVAYLQEE IETLGNQMVN FATCHPSNSS 120 NTFTDQLQVL SQNGAVDTQH IQNQLPELPI FPHIGTAAAN QGFNSEMDIE MPPVHEWEEV 180 KLFGDHSTPD PLKRFLEGME QDMLGNNAWS NELLQGIYIN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	3	112	7	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	3	112	7	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011414.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009351469.1	1e-167	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9LHS8	3e-54	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A498JF69	1e-150	A0A498JF69_MALDO; Uncharacterized protein
STRING	XP_009351469.1	1e-166	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-56	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]