PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011454.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 447aa MW: 47895.9 Da PI: 7.6694

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011454.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	57	8e-18	92	130	2	40
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLG 40 ++k+++++++hTkv+gR+RR+R++a+caar F+L+ eLG Pbr011454.1 92 PPKRTSTKDRHTKVDGRGRRIRMPALCAARGFQLTHELG 130 789***********************************9 PP
2	TCP	22.2	4.4e-07	166	248	51	114
TCP 51 Llqqakpaikeltgtssssasec.eaesssssasnsssg.............................kaaksaakskksqksaasalnlakes 114 Llqqa+pa++++tgt++++a+++ + s +ss+s+ s + + ++s+++ ln++ +s Pbr011454.1 166 LLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyyspnfslhqnqrrslfqgiglsS-----------SDSSSTLLNFQTNS 248 9*******************9998777777777755555555555666666666665333333333331...........33333334444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-13	96	130	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	12.716	98	177	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-9	166	260	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGGDDHQLH HHHHYQQHQQ QYHHRPNFPF QLLEKKELDH QEAASCSNST SPYPSLAITT 60 VDPTTNNNTS SPAATTTSAL QASSAEPSKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA 120 RGFQLTHELG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLLQQA EPAVIAATGT 180 GTIPANFTSL NISLRSSGSS MSVPSQLRSS YYSPNFSLHQ NQRRSLFQGI GLSSSDSSST 240 LLNFQTNSMH ASMLQAKQEL RDTVSLDLSE AASAGEGSMG GRKRRPPEQD LNQMGGGCGG 300 GGGGYLLQSS TGAVPASHPH SQIPANFWML ANSNNQVMSG DPIWTFPASV NNSGLYRGTM 360 PGGLHFMNFP APVTLLPSQQ QLGGSGGGGG SNDGNNMSDG QLNMLAGLNP YRHMSDTGVS 420 DSQQASGSHS HHGGGDDRHD STSHHS*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGGDDHQLH HHHHYQQHQQ QYHHRPNFPF QLLEKKELDH QEAASCSNST SPYPSLAITT  60
VDPTTNNNTS SPAATTTSAL QASSAEPSKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA  120
RGFQLTHELG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLLQQA EPAVIAATGT  180
GTIPANFTSL NISLRSSGSS MSVPSQLRSS YYSPNFSLHQ NQRRSLFQGI GLSSSDSSST  240
LLNFQTNSMH ASMLQAKQEL RDTVSLDLSE AASAGEGSMG GRKRRPPEQD LNQMGGGCGG  300
GGGGYLLQSS TGAVPASHPH SQIPANFWML ANSNNQVMSG DPIWTFPASV NNSGLYRGTM  360
PGGLHFMNFP APVTLLPSQQ QLGGSGGGGG SNDGNNMSDG QLNMLAGLNP YRHMSDTGVS  420
DSQQASGSHS HHGGGDDRHD STSHHS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011454.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369315.1	0.0	PREDICTED: transcription factor TCP14
TrEMBL	M5WM86	0.0	M5WM86_PRUPE; Uncharacterized protein
STRING	XP_009369315.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-21	TCP family protein