PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011761.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 269aa MW: 30864.4 Da PI: 5.838

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011761.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.9	1.3e-21	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pbr011761.1 88 RQRWTPTALQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	100	1.8e-32	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Pbr011761.1 87 ARQRWTPTALQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-17	83	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.354	84	149	IPR001356	Homeobox domain
SMART	SM00389	5.5E-14	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-18	87	153	IPR009057	Homeodomain-like
CDD	cd00086	1.00E-12	88	150	No hit	No description
Pfam	PF00046	2.3E-19	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MMEWEKQQLK EQQEMEGNGN GGVMYVKVMT DEQLETLRKQ IAVYATICEQ LVEMHKNLTA 60 QQDLAGVRMG NLYCDQLMTS TGHKITARQR WTPTALQLQI LERLFEQGNG TPSKQKIKEI 120 TSELSQHGQI SETNVYNWFQ NRRARSKRKQ QNAACNHAES EVDTEVDSPK DKKTRPEETF 180 QSQQNSAQRT EDLCFQSQEI SSDLHFLDPH TTKAEKMFPS HSGLRSSRHL SEMAFYDDVL 240 SRHDLMTGKM EAGNYNLFQE AEDYGMTG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011761.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006099	1e-32	AP006099.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT03D07, TM0180a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369799.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	O81788	1e-88	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A498KKP1	0.0	A0A498KKP1_MALDO; Uncharacterized protein
STRING	XP_009369799.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-91	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]