PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011832.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 908aa MW: 101402 Da PI: 6.3348

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011832.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.6e-29	590	641	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+kyFs+++kdAAk++gvc T+LKriCRq+GIkRWP+Rkik++ Pbr011832.1 590 AEKDINLQVLRKYFSGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKIKKV 641 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.382	580	661	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-24	594	641	IPR003035	RWP-RK domain
SMART	SM00666	7.1E-27	812	895	IPR000270	PB1 domain
PROSITE profile	PS51745	27.739	812	895	IPR000270	PB1 domain
SuperFamily	SSF54277	1.2E-23	813	898	No hit	No description
CDD	cd06407	1.56E-42	814	893	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.6E-24	814	892	No hit	No description
Pfam	PF00564	6.2E-21	814	893	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MDDGVLSPAT MLGAQPDSAM DLDFMDELFL EGCWLEARDG PEFPNQSLPN TPLNPSFIWH 60 TLETNGNMST NPSQNSNQEE MQTPFFKQLE EGPANPQSPC QNMIEDVVAC SGQSEDPTIG 120 RELSTRWWIR PTGNDGSASS VTQRLMTALT YIREVMRNKD VLVQVWVPVN RGGRDVLTTN 180 ELFCLDPSCS RLAKYRDISV NYQFSTGEDS TEMVKGLPGR VFSGKVPEWT PDARYFTSDE 240 YPRVGHAQQY DVSGTLALPI FEQGSRTCLG VIEVVTTDQK IRYQPDIDGI CKALEAVDLR 300 SSRNLSTENV KGCDKPYHAA LPEIQEILRS ACETHKLPLA QTWVSCIEQG KDGCRHSDDN 360 YIHCVSTVDH ACHVADPYIQ GFHEACSEHH LLRGQGIVGR AFMTNQPCFS DDMTSFFKTE 420 YPLSHHARMF NLHAAVAIRL RSTDIGSTDF VLEFFLPLEC RDPKEQKKML NSLSLIIQQT 480 CRSLRVVTDK EVEEETKFHV SEVIVPSDPG PSNVACFTEV QQNGNAVSMF PNKKQRKVLS 540 VKLSKLRQHQ EDSNLKSAEC GEEFSVLGEG EVSFSTVGAS KTREKRRAKA EKDINLQVLR 600 KYFSGSLKDA AKSIGVCSTT LKRICRQHGI KRWPSRKIKK VGHSLRKLQL VIDSVEGASG 660 AFQINSFYTN FPELTSPNLS GTSPFSNSKL SDQPNQTNLS PEGGVFSPQA TASKSPPSSC 720 SQNSSSSQCC SSKTQQHPFS CNVAGNDDPV GDNSRDGVLK RVRSEAGLHD FGQDRTELLP 780 RSQSQKILCE QQNLQSIPPS LKNNGRITQV EVQRVKVAYG DEKTRFRMQS NWRYEDLVQQ 840 IAKRFSIQDM SNFDIKYLDD DSEWVLLTCD DDLEECVDVC RSSQSHTIKL SLQISRHHLK 900 GLIGRPS*

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MDDGVLSPAT MLGAQPDSAM DLDFMDELFL EGCWLEARDG PEFPNQSLPN TPLNPSFIWH  60
TLETNGNMST NPSQNSNQEE MQTPFFKQLE EGPANPQSPC QNMIEDVVAC SGQSEDPTIG  120
RELSTRWWIR PTGNDGSASS VTQRLMTALT YIREVMRNKD VLVQVWVPVN RGGRDVLTTN  180
ELFCLDPSCS RLAKYRDISV NYQFSTGEDS TEMVKGLPGR VFSGKVPEWT PDARYFTSDE  240
YPRVGHAQQY DVSGTLALPI FEQGSRTCLG VIEVVTTDQK IRYQPDIDGI CKALEAVDLR  300
SSRNLSTENV KGCDKPYHAA LPEIQEILRS ACETHKLPLA QTWVSCIEQG KDGCRHSDDN  360
YIHCVSTVDH ACHVADPYIQ GFHEACSEHH LLRGQGIVGR AFMTNQPCFS DDMTSFFKTE  420
YPLSHHARMF NLHAAVAIRL RSTDIGSTDF VLEFFLPLEC RDPKEQKKML NSLSLIIQQT  480
CRSLRVVTDK EVEEETKFHV SEVIVPSDPG PSNVACFTEV QQNGNAVSMF PNKKQRKVLS  540
VKLSKLRQHQ EDSNLKSAEC GEEFSVLGEG EVSFSTVGAS KTREKRRAKA EKDINLQVLR  600
KYFSGSLKDA AKSIGVCSTT LKRICRQHGI KRWPSRKIKK VGHSLRKLQL VIDSVEGASG  660
AFQINSFYTN FPELTSPNLS GTSPFSNSKL SDQPNQTNLS PEGGVFSPQA TASKSPPSSC  720
SQNSSSSQCC SSKTQQHPFS CNVAGNDDPV GDNSRDGVLK RVRSEAGLHD FGQDRTELLP  780
RSQSQKILCE QQNLQSIPPS LKNNGRITQV EVQRVKVAYG DEKTRFRMQS NWRYEDLVQQ  840
IAKRFSIQDM SNFDIKYLDD DSEWVLLTCD DDLEECVDVC RSSQSHTIKL SLQISRHHLK  900
GLIGRPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011832.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369835.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_009369836.1	0.0	PREDICTED: protein NLP5-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A498HI36	0.0	A0A498HI36_MALDO; Uncharacterized protein
STRING	XP_009369835.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein