PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011928.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 1113aa    MW: 122606 Da    PI: 6.8942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011928.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.8e-21136237199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++++l
  Pbr011928.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDAVWTFRHIYRGQPKRHLLTTGWSLFISGKRLFAGDSVLFI--RDEKQQL 230
                  99*****************************9445444.38************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Pbr011928.1 231 LLGIRRA 237
                  ****997 PP
2Auxin_resp115.64.3e-38262345183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka   +++s+GmRf+m++ete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pbr011928.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMLETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 345
                  79****************************9887766*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43124265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40129251IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-17135227No hitNo description
PROSITE profilePS5086311.632136238IPR003340B3 DNA binding domain
PfamPF023622.1E-19136237IPR003340B3 DNA binding domain
SMARTSM010191.6E-21136238IPR003340B3 DNA binding domain
PfamPF065072.1E-33262345IPR010525Auxin response factor
PROSITE profilePS5174525.6749991083IPR000270PB1 domain
SuperFamilySSF542772.75E-610101077No hitNo description
PfamPF023091.1E-510471084IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MKPPANGAGE SAASCASNSC QGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASIKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VSSFDKDALL  120
RSDLALKTNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD  180
LHDAVWTFRH IYRGQPKRHL LTTGWSLFIS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM LETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SVWEIEPVTA PFFICPPPFF RSKRPRQPVM PDEDSDMESL FKRTMPWLGD EMSMMDPQVL  420
PGLSLVQWMN MQQNSSPGNT MQPNYMHSYS GSAMQNLAGA DLSQQLGLLV PQIPQMNNLQ  480
FNGQRLPEQV QQLDQLPKLS SSTSPLASMM QRQQQLGDNS QQPRQNSVNQ TLPSSQVQSQ  540
LLQPPTLVHN NGGILQQQSF SQNHLQRNLP QNLKQHQQQF AAQNQQQSFI QSQPPDQMNQ  600
QLQNLSDNQL QFQLFQKLQQ QQQSLLAQQA LQQPGQLVQL QDQQRQTFDV SQSFSRSSPT  660
QMLDMPQMAK TSHPQSRTMP QQMTKNNNSQ ANSQFSHSPQ QPKLQQQKPG VLPEMSRHMG  720
HLPKPTTNQF STAASNMMTG VAGAGQSGIT DEVPSCSTSP STNNGPSVIQ PLMNNRAHRN  780
SSIGEDMALS ATAISSSGAI NTMPSHGNLM KDFQHKSEVT PSVNIAQNQS QGILTPQAYM  840
SGAAAHTDYL DTSSSTTSVG LSQNDVHLQQ NNAPLPFHPQ SMLFRDASQE VEVLADQRNN  900
VLYGSNIDGQ LGIPLNPDPM LAKGVVGLAR DFSNNLSSGG ILGNYENSKD AQPELSSSMV  960
SQSFGVPDMT FNSIDSAIND SGFLDSGPWA PAPPLQRMRT YTKVYKRGAV GRSIDVTRYS  1020
NYDGLKQDLA RRFGIEGQLE DRGRVGWKLV YVDHEKDVLL VGDDPWEEFV NCVRCIKILS  1080
PQEVQQMSLD GDFGGNAVLP NQACSSSDGG KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1692136643388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370019.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A498HPB90.0A0A498HPB9_MALDO; Auxin response factor
STRINGXP_009370019.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19