PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012136.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 415aa MW: 46825.7 Da PI: 4.5896

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012136.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.3	5.7e-34	22	113	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k ye+++d++ +++iswse g+sf++ld+ +f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++ ++ w F+++ F +g+k+ll++i Pbr012136.1 22 FLRKCYEMVDDKDSDSIISWSEAGDSFAILDMAQFSISMLPKYFKHSNFSSFMRQLNIYGFRKIDPDR---------WVFANEGFIRGQKHLLKNIA 109 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ Pbr012136.1 110 RRKH 113 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.1E-51	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.8E-35	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.52E-33	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.0E-18	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-29	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-18	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-18	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MVKSAEKGGG DGSGPSGSVP PFLRKCYEMV DDKDSDSIIS WSEAGDSFAI LDMAQFSISM 60 LPKYFKHSNF SSFMRQLNIY GFRKIDPDRW VFANEGFIRG QKHLLKNIAR RKHPQGADQK 120 KILQQKDNPD IPSENISENG LWKEVENLKT DKVALKQELA KLRQHQEISQ NKLLLLRNRL 180 RGMEKNQQQM LSFLVMAMQS PGFLVQLLHP KENSWRIAEP GDIIEQCMDD DRPVASDGAI 240 VRYQPPMIEA PKPLVPPNSG SGKQPEVDAY LGGMEDFVVN PDFMKMLMDE KSSPVETHAP 300 YTLPDISDDG AWEQFLLASP FLENIEGTKE DGEEPADARM EVEPMVSDLD ESQKFDYFVE 360 QMKKSQNFAS ESTVDGSNME SSQNLEFITE QMGHLASDSN NMEQNQESRR TTSV*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MVKSAEKGGG DGSGPSGSVP PFLRKCYEMV DDKDSDSIIS WSEAGDSFAI LDMAQFSISM  60
LPKYFKHSNF SSFMRQLNIY GFRKIDPDRW VFANEGFIRG QKHLLKNIAR RKHPQGADQK  120
KILQQKDNPD IPSENISENG LWKEVENLKT DKVALKQELA KLRQHQEISQ NKLLLLRNRL  180
RGMEKNQQQM LSFLVMAMQS PGFLVQLLHP KENSWRIAEP GDIIEQCMDD DRPVASDGAI  240
VRYQPPMIEA PKPLVPPNSG SGKQPEVDAY LGGMEDFVVN PDFMKMLMDE KSSPVETHAP  300
YTLPDISDDG AWEQFLLASP FLENIEGTKE DGEEPADARM EVEPMVSDLD ESQKFDYFVE  360
QMKKSQNFAS ESTVDGSNME SSQNLEFITE QMGHLASDSN NMEQNQESRR TTSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	9	111	17	129	Heat shock factor protein 1
5d5v_B	2e-26	9	111	17	129	Heat shock factor protein 1
5d5v_D	2e-26	9	111	17	129	Heat shock factor protein 1
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Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012136.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009351567.1	0.0	PREDICTED: heat stress transcription factor A-8
TrEMBL	D9ZJ25	0.0	D9ZJ25_MALDO; HSF domain class transcription factor
STRING	XP_009351567.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10419	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	9e-91	heat shock transcription factor A8