PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012633.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 685aa    MW: 77063.3 Da    PI: 6.9334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012633.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182680256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +kR+++t+eq+++Lee+F ++ +p++++r++L ++lgL+ +q+ +WFqN+R++ k
  Pbr012633.1 26 KKRQRHTSEQIQRLEEFFINCTHPDENDRKQLCRELGLEPNQIMFWFQNKRTQIK 80
                 89*************************************************9877 PP
2START125.66e-402094312206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  +a +a++elvk+ + e+p W ks+      +n+d +++ f+++k       ++e +++sgvv   +a l   +ld++ +W e ++     a+t+ev++
  Pbr012633.1 209 IADSAMEELVKLFQIEKPIWIKSPtngrYLLNRDNYVKMFPKAKHfknsrARVESSKDSGVVHISAAHLIDMFLDSN-KWEELFPtivtTAKTIEVLE 305
                  6789********************9888889*********999999***99**************************.******99999********* PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  +g      g l lm+ +   lsplv  R f+f+R+++q + g+wvi+dvS +s +     ++++ R   lpSg++ie++ ng+ k+tw+eh+++++++
  Pbr012633.1 306 TGmsgnrnGCLKLMYEQIHILSPLVLpRAFYFLRHCQQTEPGTWVIADVSYNSAKGSFArQPQSWR---LPSGCMIEDMHNGYAKITWIEHMEVDDKT 400
                  ************************966**************************9998778999999...***************************99 PP

                  X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                    h l+r l+ s++a ga +w  tlqr ce+
  Pbr012633.1 401 QtHRLYRDLICSSVAYGAERWIVTLQRMCER 431
                  98***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.58E-18782IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-191083IPR009057Homeodomain-like
PROSITE profilePS5007116.6652282IPR001356Homeobox domain
SMARTSM003891.4E-142486IPR001356Homeobox domain
CDDcd000861.72E-152682No hitNo description
PfamPF000463.4E-162680IPR001356Homeobox domain
SuperFamilySSF559614.53E-29199432No hitNo description
PROSITE profilePS5084841.878199434IPR002913START domain
CDDcd088756.21E-106203430No hitNo description
SMARTSM002341.0E-22208431IPR002913START domain
PfamPF018529.6E-33209431IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-6255396IPR023393START-like domain
SuperFamilySSF559612.88E-14451667No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MELPRNSNYQ SSGDGHEASS CRKGNKKRQR HTSEQIQRLE EFFINCTHPD ENDRKQLCRE  60
LGLEPNQIMF WFQNKRTQIK AQTERAETTA LRQLNENIRR ENFAMKETLK NVVCPTCDGL  120
PISGEDQQLS LQRLQLENSY LKQEHDKLAN LLPKYNATPV VGSSLNLSPG CSMNQVIARP  180
PLNLSPTNPA LAYQLKENTE MEKALMKDIA DSAMEELVKL FQIEKPIWIK SPTNGRYLLN  240
RDNYVKMFPK AKHFKNSRAR VESSKDSGVV HISAAHLIDM FLDSNKWEEL FPTIVTTAKT  300
IEVLETGMSG NRNGCLKLMY EQIHILSPLV LPRAFYFLRH CQQTEPGTWV IADVSYNSAK  360
GSFARQPQSW RLPSGCMIED MHNGYAKITW IEHMEVDDKT QTHRLYRDLI CSSVAYGAER  420
WIVTLQRMCE RFDCLMDDVG STCVFGGVVT LPEGKKSLMK LSQRMVKNFC GMLSMEGKLD  480
FPQLSEVDSS GIRVSVHKSA EIGQPHGTIV SIATSLWLPL SSQTIFNFFR DEKTRIQWDV  540
LSHGIPVHEI AYISTGTHPE NHISIIRPFI PTEDNMLMLQ ECHIDPLGSF IIYAPVDIQS  600
LNVAISGEDS SNIAILPSGF LISGDGRPEM GDACGSLVTV AFHILVSSPT TSEQMNMELV  660
ATVNTLISST VKKIKVALKC SGLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012633.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0276170.0AB027617.1 Pyrus pyrifolia gene for UDP-glucose pyrophosphorylase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506060.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBLA0A498HGL50.0A0A498HGL5_MALDO; Uncharacterized protein
STRINGXP_008343264.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11