PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012684.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 361aa    MW: 39835.9 Da    PI: 5.2018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012684.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18208258255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  Pbr012684.1 208 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAFRIRG 258
                  8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-31207267IPR001471AP2/ERF domain
CDDcd000187.12E-33207267No hitNo description
SuperFamilySSF541718.5E-23208268IPR016177DNA-binding domain
PfamPF008473.2E-14208258IPR001471AP2/ERF domain
PROSITE profilePS5103224.302208266IPR001471AP2/ERF domain
SMARTSM003802.6E-37208272IPR001471AP2/ERF domain
PRINTSPR003672.4E-10209220IPR001471AP2/ERF domain
PRINTSPR003672.4E-10232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEQPQHYTS CCSLTVNNIS SPCMMPCLTQ QWGDLPFQVD NSEDMIAYNS VHDALSLGWS  60
PDHTLPFQVE PCLTQQWGDL PFQVDNSEDM IAYNSVHDAL SLGWSPDHSL ECVKPEQTYD  120
LDHLFDQSHD QLPPDVSTQS QHHDFNVSIN GNEPSPTLVL PPDTDIPPLD HDDRDQNQVQ  180
VGDAVAEQDG VNVNVPKLQK SGVARGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTYE  240
TSEEAALAYD RAAFRIRGSK ALLNFPHRIG LNEPPPVRVT GKRKEPEQEA AASSSTFSSS  300
SSSSSSSSSS ATPTAATKRT KLDKSVSSSA DHDHQANMRH KRQKNNTLYL LPLGEQLLVS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-39204273170ATERF1
3gcc_A9e-39204273170ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1288570.0KC128857.1 Malus x domestica cultivar Taishanzaoxia ethylene response factor (ERF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370421.10.0PREDICTED: ethylene-responsive transcription factor 2-like isoform X1
TrEMBLA0A4D5XF430.0A0A4D5XF43_9ROSA; Ethylene Responsive Factor ERF2
STRINGXP_009370421.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-45ethylene responsive element binding factor 2