PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012712.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 320aa    MW: 35931.8 Da    PI: 6.1532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012712.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025727323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k+Fs+   +  H+r+H
  Pbr012712.1  7 CKICNKRFSNGKAMGGHMRSH 27
                 *******************99 PP
2zf-C2H214.20.00013183205123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  Pbr012712.1 183 YKCETCDKVFRSYQALGGHRASH 205
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-5232No hitNo description
PROSITE profilePS5015710.138532IPR007087Zinc finger, C2H2
SMARTSM003550.078527IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-9629IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93183205IPR007087Zinc finger, C2H2
PfamPF139121.1E-11183207IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-8183205No hitNo description
SMARTSM003550.012183205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-8239266No hitNo description
PfamPF139126.7E-9243266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806244266IPR007087Zinc finger, C2H2
SMARTSM003550.62244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEKQRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPPQQSP PQQHHQLGDS PESSSPPFST  60
SNRGMHSSLD SAVVHDGGDS DSESHPRNPT HRRSKRRRKV IGKSSLTLPF EAEQVSSVTD  120
AFSTADVARC LIMLSMDKWD KWEKVKVKNG VDEFAVEEEE DESDDRGASG FRLHTRVRTR  180
GKYKCETCDK VFRSYQALGG HRASHKKILK TQVFDDYEEE GDEDFEEDDG QNGNLAVVEN  240
HRTFECSVCF KQFDSGQALG GHKKVHYYNN LTINAPTKNM NLPSSSTNFV DNLVIDLNLP  300
APEEEEEEVS QVEFSTVFD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012712.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506035.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A498JLV71e-152A0A498JLV7_MALDO; Uncharacterized protein
STRINGXP_009370510.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-36C2H2-like zinc finger protein