PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013062.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 177aa MW: 19721.3 Da PI: 7.2898

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013062.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.2	6.7e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+C++lrr+Cak+C++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ Pbr013062.1 7 PCASCRLLRRRCAKGCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARMRDPVYGCVGAISFLQNQVSELQMQLAVAQ 104 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Pbr013062.1 105 AE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.143	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGSGSSPCAS CRLLRRRCAK GCIFAPYFPS DDPHKFAIVH KVFGASNVSK MLQELPIHQR 60 GDAVSSLVYE ANARMRDPVY GCVGAISFLQ NQVSELQMQL AVAQAETLCF QMQQDPVALP 120 TQIDQHQHHH QHQDHDQKSL LLSNSDFNSI PHQYFSSFAS PSNVIQDPLK RESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	2	121	7	128	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	2	121	7	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013062.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354277.1	1e-130	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	4e-79	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A498K785	1e-109	A0A498K785_MALDO; Uncharacterized protein
STRING	XP_009354277.1	1e-129	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-69	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]